Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58750 387 / 3e-133 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G24220 218 / 3e-67 5[beta]-StR, 5[beta]-StR, 5[beta]-StR, 5[beta]-StR, 5[beta]-StR, 5[beta]-StR, AWI31, VEP1 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032854 [exp] 229 / 9e-72 AT4G24220 577 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10018705 [exp] 226 / 2e-70 AT4G24220 590 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10018704 [exp] 209 / 1e-63 AT4G24220 530 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10039686 [exp] 196 / 5e-59 AT4G24220 302 / 5e-100 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10039689 [exp] 189 / 4e-56 AT4G24220 305 / 4e-101 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10000076 [exp] 173 / 2e-51 AT4G24220 394 / 3e-138 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10039687 [exp] 165 / 6e-47 AT4G24220 271 / 8e-88 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10039688 [exp] 68 / 6e-13 AT4G24220 97 / 1e-23 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10027155 [exp] 49 / 3e-06 AT3G21865 310 / 6e-103 peroxin 22 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G045700 [exp] 431 / 8e-151 AT5G58750 449 / 5e-158 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G120600 [exp] 221 / 3e-68 AT4G24220 577 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.003G134500 [exp] 218 / 4e-67 AT4G24220 550 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G120700 [exp] 216 / 8e-67 AT4G24220 569 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G019700 [exp] 212 / 4e-65 AT4G24220 556 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G019600 [exp] 212 / 7e-65 AT4G24220 550 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G019500 [exp] 207 / 3e-63 AT4G24220 541 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G019400 [exp] 203 / 9e-62 AT4G24220 544 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G019300 [exp] 196 / 7e-59 AT4G24220 560 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.017G030700 [exp] 194 / 4e-58 AT4G24220 292 / 2e-96 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040675 pacid=23157712 polypeptide=Lus10040675 locus=Lus10040675.g ID=Lus10040675.BGIv1.0 annot-version=v1.0 ATGGCATCCGACGCAAAAACAGAACCACCAACCCACAAATCTCCTTCCAAAAATGTCGCCATCATATTCGGCGTAACGGGCCTAGTCGGAAGGGAAATAG CCAAGAAGCTCATCTCCATCACCGAATCATGGACAGTCTACGGCGTCTCCAGAAGACCCGACAAGCTCCCAATCAGCAGCCCAAACTACCACTTCATCCC CTGCGACCTTCTAAACCCTCTCGACACACAAACAAAGCTCTCCCCAATCTCAAACCTCATCACCCACTTGTTCTGGGTCACCTGGGCCGCCAATTTCCCT CTCGATTCCAAGCAATGTTGCGACGAGAACCGATCCATGATGTCCAACGCCCTCCAACCGATTCTCAGTTCGAATAGTCAGTCTCTGAAGCACGTCTCGC TTCAGACCGGGCTAAAGCATTACATCTCGCTGCGGGATTTCGTGAACGGGGGAGGAATCCGTCGTTTCTACGACGAGGATTGCCCTAGAGCTGAAGATGG GTTCAATTTCTACTATTCCCTTGAGGATCTATTGAAGGAGAAATTATTAGAGGGAAGCGGGGCGGGTTGGTCGGTGATCCGGCCCGGGTTGGTGATGGGG AGCTCGACGACTTCGATTTACAACGTGATCGGGAGTCTGTGCGTTTACGGCGTCATCTGCCGTCGGATGGATCTTCCGTTTGTGTTCGGAGGGACGAAGG AGTGCTGGGAGGAGGCTTACATCGACGGGTCGGATTCGGGTTTGGTAGCGGAGCACCACATCTGGGCCGCGACGGATGAGCGCGTTCGGTCAACGGCCGA GCGGGCGTTGAATTCGGTCAACGGGTCGAGTTTCTCGTGGAAGGGGATCTGGGCGGTGATTGCGGAGAAGATTGGGGTGGAGGCGTCGGAGGAAGGGTTG GATGAGGGGTTTCGGTTTGCGGCGGCGATGGGTGGGTTGGGAGGAGTTTGGGCTGAAATCGTGAAAGAGGAAGGGTTGGTGGAGACGGAGATGGAGGAGT TAGCGAATTGGGAGTTTTTGGATGTGTTGTTTAGGTTTCCGATTAAGTTGCTCGGGAGTAGGGAGAAGTCGGATCGACTTGGTTTCACGGCGAGGCGGGA GACGGCTGAGTCTGCGGCGTATTGGATCGATTCGATGAGGCGAGAGAAGCTGATTCCTTGA
AA sequence Show only first row Show all	>Lus10040675 pacid=23157712 polypeptide=Lus10040675 locus=Lus10040675.g ID=Lus10040675.BGIv1.0 annot-version=v1.0 MASDAKTEPPTHKSPSKNVAIIFGVTGLVGREIAKKLISITESWTVYGVSRRPDKLPISSPNYHFIPCDLLNPLDTQTKLSPISNLITHLFWVTWAANFP LDSKQCCDENRSMMSNALQPILSSNSQSLKHVSLQTGLKHYISLRDFVNGGGIRRFYDEDCPRAEDGFNFYYSLEDLLKEKLLEGSGAGWSVIRPGLVMG SSTTSIYNVIGSLCVYGVICRRMDLPFVFGGTKECWEEAYIDGSDSGLVAEHHIWAATDERVRSTAERALNSVNGSSFSWKGIWAVIAEKIGVEASEEGL DEGFRFAAAMGGLGGVWAEIVKEEGLVETEMEELANWEFLDVLFRFPIKLLGSREKSDRLGFTARRETAESAAYWIDSMRREKLIP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58750			NAD(P)-binding Rossmann-fold s...		Lus10040675 [exp]	0	1
AT5G07360			Amidase family protein (.1.2)		Lus10032519 [exp]	3.0	0.9225
AT3G22800			Leucine-rich repeat (LRR) fami...		Lus10039363 [exp]	3.2	0.9144
AT1G68400			leucine-rich repeat transmembr...		Lus10040653 [exp]	6.2	0.9179
					Lus10016767 [exp]	7.2	0.8712
AT3G02645			Plant protein of unknown funct...		Lus10016396 [exp]	7.5	0.8685
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10032926 [exp]	8.8	0.9183
AT4G38260			Protein of unknown function (D...		Lus10016024 [exp]	9.8	0.9171
AT5G15130	WRKY	ATWRKY72, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10023615 [exp]	10.7	0.9138
					Lus10005397 [exp]	13.0	0.9129
AT1G32170		XTH30, XTR4	xyloglucan endotransglycosylas...		Lus10012115 [exp]	23.1	0.8937

Compare expression of checked genes

Lus10040675 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.