Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29940 282 / 7e-84 ABCG31, PDR3, ATPDR3 ATP-binding cassette G31, pleiotropic drug resistance 3 (.1) AT4G15233 277 / 2e-82 ABCG42 ATP-binding cassette G42, ABC-2 and Plant PDR ABC-type transporter family protein (.1.2) AT2G36380 209 / 7e-59 ABCG34, PDR6, ATPDR6 ATP-binding cassette G34, pleiotropic drug resistance 6 (.1) AT1G66950 208 / 2e-58 ABCG39, PDR11, ATPDR11 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) AT3G16340 206 / 9e-58 ABCG29, ATPDR1, PDR1, AtABCG29 ATP-binding cassette G29, pleiotropic drug resistance 1 (.1.2) AT1G15520 204 / 7e-57 ATABCG40, ABCG40, PDR12, ATPDR12 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) AT1G59870 201 / 5e-56 ATABCG36, ABCG36, PEN3, PDR8, ATPDR8 PENETRATION 3, ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8, Arabidopsis thaliana ATP-binding cassette G36, ATP-binding cassette G36, ABC-2 and Plant PDR ABC-type transporter family protein (.1) AT3G30842 201 / 7e-56 ABCG38, PDR10, ATPDR10 ATP-binding cassette G38, pleiotropic drug resistance 10 (.1) AT2G26910 198 / 6e-55 PEC1, ABCG32, PDR4, ATPDR4 PERMEABLE CUTICLE 1, ATP-binding cassette G32, pleiotropic drug resistance 4 (.1) AT1G15210 198 / 7e-55 ABCG35, PDR7, ATPDR7 ATP-binding cassette G35, pleiotropic drug resistance 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018230 [exp] 446 / 9e-144 AT2G29940 2141 / 0.0 ATP-binding cassette G31, pleiotropic drug resistance 3 (.1) Lus10020550 [exp] 286 / 2e-85 AT2G29940 1962 / 0.0 ATP-binding cassette G31, pleiotropic drug resistance 3 (.1) Lus10041684 [exp] 206 / 4e-60 AT1G15520 899 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10027725 [exp] 211 / 2e-59 AT1G66950 1077 / 0.0 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) Lus10023878 [exp] 209 / 7e-59 AT2G36390 1253 / 0.0 BRANCHING ENZYME 3, starch branching enzyme 2.1 (.1) Lus10014384 [exp] 207 / 7e-58 AT1G66950 1917 / 0.0 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) Lus10034020 [exp] 206 / 1e-57 AT1G15520 2029 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10014150 [exp] 205 / 3e-57 AT3G16340 2221 / 0.0 ATP-binding cassette G29, pleiotropic drug resistance 1 (.1.2) Lus10037562 [exp] 205 / 4e-57 AT1G59870 2178 / 0.0 PENETRATION 3, ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8, Arabidopsis thaliana ATP-binding cassette G36, ATP-binding cassette G36, ABC-2 and Plant PDR ABC-type transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G251100 [exp] 302 / 6e-91 AT2G29940 2081 / 0.0 ATP-binding cassette G31, pleiotropic drug resistance 3 (.1) Potri.003G183200 [exp] 210 / 4e-59 AT1G15520 2031 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.008G024400 [exp] 210 / 6e-59 AT1G66950 2011 / 0.0 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) Potri.001G048700 [exp] 208 / 3e-58 AT1G15520 2000 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.003G179000 [exp] 208 / 3e-58 AT1G15520 2010 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G049000 [exp] 207 / 3e-58 AT1G15520 1847 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G048800 [exp] 207 / 3e-58 AT1G15520 2034 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.006G115000 [exp] 207 / 4e-58 AT1G66950 2148 / 0.0 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) Potri.003G049600 [exp] 207 / 6e-58 AT3G16340 2065 / 0.0 ATP-binding cassette G29, pleiotropic drug resistance 1 (.1.2) Potri.001G048900 [exp] 207 / 7e-58 AT1G15520 2055 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0181 [flax] [poplar] ABC-2 PF01061 [flax] [poplar] ABC2_membrane ABC-2 type transporter CL0181 [flax] [poplar] PF08370 [flax] [poplar] PDR_assoc Plant PDR ABC transporter associated
Representative CDS sequence Show only first row Show all	>Lus10040676 pacid=23157791 polypeptide=Lus10040676 locus=Lus10040676.g ID=Lus10040676.BGIv1.0 annot-version=v1.0 ATGTTTCGACTGCCAGTTTTCTATAAGCAACGAGATAATAGGTTTCATCCGGCATGGGCTTGGTCTCTGGCTAGTTTCATGCTACGCGTTCCGTATTCCA TTCTTGAAGCTATTATATGGTCTCTTATTGTCTACTACAGTGTTGGCTTTTCACCTGAGATGTGGAGATTCTTCCGGTTCATGTTTCTGCTGTTTTCCGT ACACCAAATGGCCTTCGGTGTCTTTCGTCTAGTCGCTGTAGTTGCACGGGATATGGTGATTGCCAACACTTTTGCTTCGGCTTGTCTGTTGATTACATTC TTGTCGGATATGATCAATCCATGGTGGGCTTGGGCGTTTTGGTTATCACCACTGACATATGCTCAACGTACAATTTCTGTCAATGAGTTTGCTGCTGATA GGTGGATAAAGAAATCTGCTACTGGAAATTATACGATTGGTAACAACATTCTCCGCAGCCATGGCTTACCAACTGATGAAAACTGGTACTGGCTTGGAGT GGGTGTTTTGTTGCTTTATGCCTATGTGTTCTATATTGGCTCTTTTGCAGCTCTTAAAAAGGCTCAAGCTGTCACTCCATCTGATGCTGCAGAAAAAATG AACATCAAAGGGAACAAGAAATGTGTATCAAATGAGTCAAATGTACAAGAGAGTAAAAAGAAAGGAATGATTCTTCCATTTCAGCCCCTAGTAATGACTT TCCACAATGTAAACTACTTTGTTGATATGCCAAAGGCAATGCGTCAACGAGGTATGAACGAGACACGGTTGCAGCTTTTGTCAAATGGGAATGGACTGTT CTCACTTATGGTTGGTTTACCCGGTAGTTCTGGTTTGTCAACAGAACAAAGGAAACGCTTAACAATCGCCGTGGAACTTGTTGCAAATCCTTCCATTATT TTCATGGATGAGCCTACATCTGGACTTGATGCGAGAGCTGCAGCCATAGTGATGCGAACTGTTCGTAATACTGTGGATACTGGACGGACAGTGGTTTGCA CCATTCATCAACCAAGTATTGACATTTTCGAAGCTTTTGACGAGCTACTTCTCATGAAACGAGGAGGCCGTGTTATATATGGTGGGAAGCTTGGTCTCCA TTCAAAAAATTTGATAGACTACTTTCAGGGAATCAGAGGAGTCTCTCCAATTCGTGAAGGTCATTTCATTCCTGTGTGGTGGATATGGTTTTACTACATA TGCCCTATAGAATGGACCCTGCAGGGCATCATCTCGTCTCAGCTTGGCAATGTGGAAACCATGATTCAAGGGCATGGGTTCCGGATATCGGTTAAGGATT ATCTGAAACAGAATCATGGATACGGGACGGGCAAGATTGGACCTTCGATTGCGGTGCTGCTATGCTTCAATATCCTCTTCTTCTCTGCATTTGCTGCTTC TGTGAAAATGATCAACTTCCAGAGAAGATAG
AA sequence Show only first row Show all	>Lus10040676 pacid=23157791 polypeptide=Lus10040676 locus=Lus10040676.g ID=Lus10040676.BGIv1.0 annot-version=v1.0 MFRLPVFYKQRDNRFHPAWAWSLASFMLRVPYSILEAIIWSLIVYYSVGFSPEMWRFFRFMFLLFSVHQMAFGVFRLVAVVARDMVIANTFASACLLITF LSDMINPWWAWAFWLSPLTYAQRTISVNEFAADRWIKKSATGNYTIGNNILRSHGLPTDENWYWLGVGVLLLYAYVFYIGSFAALKKAQAVTPSDAAEKM NIKGNKKCVSNESNVQESKKKGMILPFQPLVMTFHNVNYFVDMPKAMRQRGMNETRLQLLSNGNGLFSLMVGLPGSSGLSTEQRKRLTIAVELVANPSII FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKLGLHSKNLIDYFQGIRGVSPIREGHFIPVWWIWFYYI CPIEWTLQGIISSQLGNVETMIQGHGFRISVKDYLKQNHGYGTGKIGPSIAVLLCFNILFFSAFAASVKMINFQRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29940		ABCG31, PDR3, A...	ATP-binding cassette G31, plei...		Lus10040676 [exp]	0	1
AT5G66310			ATP binding microtubule motor ...		Lus10014268 [exp]	1.4	0.9777
AT2G22620			Rhamnogalacturonate lyase fami...		Lus10004281 [exp]	2.0	0.9773
AT2G22620			Rhamnogalacturonate lyase fami...		Lus10019231 [exp]	2.4	0.9592
AT1G09170			P-loop nucleoside triphosphate...		Lus10020682 [exp]	3.0	0.9764
AT4G05530		SDRA, IBR1	SHORT-CHAIN DEHYDROGENASE/REDU...		Lus10001430 [exp]	3.3	0.9394
AT5G27000		KATD, ATK4	KINESIN-LIKE PROTEIN IN ARABID...		Lus10029865 [exp]	3.7	0.9559
AT2G37370			unknown protein		Lus10009063 [exp]	4.9	0.9556
AT3G54100			O-fucosyltransferase family pr...		Lus10035540 [exp]	5.0	0.9630
AT5G44390			FAD-binding Berberine family p...		Lus10026290 [exp]	5.3	0.9371
AT5G16780		MDF, DOT2	MERISTEM-DEFECTIVE, DEFECTIVEL...		Lus10014613 [exp]	5.9	0.8571

Compare expression of checked genes

Lus10040676 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.