Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64780 210 / 3e-66 ATAMT1;2 ammonium transporter 1;2 (.1) AT4G28700 188 / 9e-58 AMT1;4 ammonium transporter 1;4 (.1) AT4G13510 186 / 7e-57 ATAMT1;1, AMT1;1 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1) AT3G24300 184 / 2e-56 ATAMT1;3, AMT1;3 ammonium transporter 1;3 (.1) AT3G24290 182 / 2e-55 AMT1;5 ammonium transporter 1;5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018229 [exp] 315 / 1e-107 AT1G64780 610 / 0.0 ammonium transporter 1;2 (.1) Lus10000823 [exp] 195 / 7e-64 AT1G64780 312 / 3e-105 ammonium transporter 1;2 (.1) Lus10004760 [exp] 196 / 9e-63 AT1G64780 489 / 5e-173 ammonium transporter 1;2 (.1) Lus10023705 [exp] 182 / 2e-55 AT4G13510 748 / 0.0 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1) Lus10004403 [exp] 160 / 2e-47 AT4G13510 739 / 0.0 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1) Lus10028397 [exp] 47 / 1e-06 AT2G38290 481 / 6e-168 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G045200 [exp] 248 / 2e-81 AT1G64780 529 / 0.0 ammonium transporter 1;2 (.1) Potri.019G023600 [exp] 204 / 1e-63 AT1G64780 730 / 0.0 ammonium transporter 1;2 (.1) Potri.008G173800 [exp] 196 / 8e-61 AT4G13510 692 / 0.0 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1) Potri.002G255000 [exp] 194 / 2e-60 AT4G13510 688 / 0.0 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1) Potri.010G063500 [exp] 193 / 9e-60 AT4G13510 671 / 0.0 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1) Potri.002G255100 [exp] 192 / 2e-59 AT4G28700 633 / 0.0 ammonium transporter 1;4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00909 [flax] [poplar] Ammonium_transp Ammonium Transporter Family
Representative CDS sequence Show only first row Show all	>Lus10040677 pacid=23157916 polypeptide=Lus10040677 locus=Lus10040677.g ID=Lus10040677.BGIv1.0 annot-version=v1.0 ATGGACGTATGCAACAGCCTACTCGGTGGCTTTGTAGCAATCACTTCCGGCTGTGCAGTAGTAGAGCCATGGGCCGCAATTGTGTGCGGGTTTTTTGCCG CTTGGGTCCTAACAGGGCTCAAGATCTTGGCACTGAAGCTACAATTCGACGACCCTTTAGAAGCTACACCGCTTCATGGCGGATGTGGAGCGTGGGGGTT GATATTCACCCGACTCTTCGCAAAGGAGGAGTTTGTGGTTCAAGCCTATGATTCCGGATTGGCTGGAATTTCTCGGCCTTATGGGCTTCTGCTGGGTGGG GGGTGGAACCTGATCATTTCGCAAGTTGTTGAACTGGTCGTGATCATTGGCTGGGTTAGCGTGACGATGGGACCTATGTTCTATGCACTACACAAGCTGA GCATTTTGAGGACATCGATCGAAGAAGAAGTTGCGGGGCTTGATGTCTCGAGCCATGGTGGGTATGCGTACGTTAATCATGGAGACGAAGACCAGCCTCG TGGCTATGGAGAGCAATTGTGA
AA sequence Show only first row Show all	>Lus10040677 pacid=23157916 polypeptide=Lus10040677 locus=Lus10040677.g ID=Lus10040677.BGIv1.0 annot-version=v1.0 MDVCNSLLGGFVAITSGCAVVEPWAAIVCGFFAAWVLTGLKILALKLQFDDPLEATPLHGGCGAWGLIFTRLFAKEEFVVQAYDSGLAGISRPYGLLLGG GWNLIISQVVELVVIIGWVSVTMGPMFYALHKLSILRTSIEEEVAGLDVSSHGGYAYVNHGDEDQPRGYGEQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64780		ATAMT1;2	ammonium transporter 1;2 (.1)		Lus10040677 [exp]	0	1
AT1G26940			Cyclophilin-like peptidyl-prol...		Lus10036733 [exp]	3.5	0.7624
AT1G62760			Plant invertase/pectin methyle...		Lus10032232 [exp]	5.5	0.6882
AT1G63690		ATSPPL2	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10032285 [exp]	17.7	0.7099
AT2G28305		ATLOG1	LONELY GUY 1, Putative lysine ...		Lus10021462 [exp]	22.1	0.7294
AT1G74920		ALDH10A8	aldehyde dehydrogenase 10A8 (....		Lus10042149 [exp]	22.3	0.7095
AT4G34610	HD	BLH6	BEL1-like homeodomain 6 (.1.2)		Lus10028802 [exp]	24.3	0.6741
AT5G14670		ATARFA1B	ADP-ribosylation factor A1B (....		Lus10013021 [exp]	26.5	0.6702
AT1G48300			unknown protein		Lus10009975 [exp]	27.1	0.6990
AT5G55490		GEX1, ATGEX1	gamete expressed protein 1 (.1...		Lus10042450 [exp]	28.5	0.6446
AT5G42890		ATSCP2	sterol carrier protein 2 (.1)		Lus10021727 [exp]	32.2	0.7162

Compare expression of checked genes

Lus10040677 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.