Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07230 809 / 0 NPC1 non-specific phospholipase C1 (.1) AT2G26870 652 / 0 NPC2 non-specific phospholipase C2 (.1) AT3G48610 601 / 0 NPC6 non-specific phospholipase C6 (.1) AT3G03520 569 / 0 NPC3 non-specific phospholipase C3 (.1) AT3G03530 559 / 0 NPC4 non-specific phospholipase C4 (.1) AT3G03540 543 / 0 NPC5 non-specific phospholipase C5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005860 [exp] 982 / 0 AT1G07230 810 / 0.0 non-specific phospholipase C1 (.1) Lus10025726 [exp] 612 / 0 AT3G48610 774 / 0.0 non-specific phospholipase C6 (.1) Lus10035935 [exp] 607 / 0 AT3G48610 773 / 0.0 non-specific phospholipase C6 (.1) Lus10028492 [exp] 579 / 0 AT3G03530 689 / 0.0 non-specific phospholipase C4 (.1) Lus10009153 [exp] 575 / 0 AT3G03530 694 / 0.0 non-specific phospholipase C4 (.1) Lus10036038 [exp] 363 / 2e-123 AT2G26870 423 / 1e-147 non-specific phospholipase C2 (.1) Lus10001208 [exp] 232 / 3e-74 AT1G07230 213 / 1e-67 non-specific phospholipase C1 (.1) Lus10001207 [exp] 182 / 2e-55 AT1G07230 146 / 7e-43 non-specific phospholipase C1 (.1) Lus10036039 [exp] 172 / 2e-50 AT2G26870 229 / 4e-73 non-specific phospholipase C2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G250500 [exp] 859 / 0 AT1G07230 820 / 0.0 non-specific phospholipase C1 (.1) Potri.009G045100 [exp] 851 / 0 AT1G07230 815 / 0.0 non-specific phospholipase C1 (.1) Potri.009G069900 [exp] 645 / 0 AT2G26870 786 / 0.0 non-specific phospholipase C2 (.1) Potri.001G275500 [exp] 633 / 0 AT2G26870 769 / 0.0 non-specific phospholipase C2 (.1) Potri.012G099300 [exp] 619 / 0 AT3G48610 834 / 0.0 non-specific phospholipase C6 (.1) Potri.015G097900 [exp] 611 / 0 AT3G48610 813 / 0.0 non-specific phospholipase C6 (.1) Potri.013G073600 [exp] 608 / 0 AT3G03530 709 / 0.0 non-specific phospholipase C4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0088 [flax] [poplar] Alk_phosphatase PF04185 [flax] [poplar] Phosphoesterase Phosphoesterase family
Representative CDS sequence Show only first row Show all	>Lus10040678 pacid=23157892 polypeptide=Lus10040678 locus=Lus10040678.g ID=Lus10040678.BGIv1.0 annot-version=v1.0 ATGGATTTCAGGCGGCGGCGGCGACTTCTCATCACTGCTCTGTTCCTTCTCTGCTTGGTCGTCTCTTCCCAGGCGCGAGACTATGAGAAACTTTTCAACA AGCACAAAATCGGAGGCCCTATCAAAACAATCGTCGTTCTAGTGATGGAGAATCGCTCCTTTGACCACATGCTCGGCTGGCTCAAGTCAACCCGCCCCGA CATCGACGGGCTTACAGGGACCGAATCCAACAAGATCTCCGCCACCGACGCTAATTCCCCTGAAGTCTTTGTCTCCAACGACGCGATATTCGTCGACTCC GACCCGGGCCACTCCTTCCAGGCCATCCGGGAGCAAATATTTGGGTCGAATGACTCCCATAGGAACCCGGCTCCGATGAACGGTTTCGTCCAGCAGGCTT ACAATATGAGTGAGTCGATGGCGAAGACGGTGATGAGCGGGTTCCACCCGAGTCGGATCCCGGTATTCGCCAAGTTGGCAAACGAATTCGCCGTTTTCGA CCGGTGGTTCGCCTCGGTTCCTGCGTCAACTCAGCCAAACCGGTTCTACGTCCACTCGGCGACTTCGCACGGTGCCACTAGCAACGTTCGCAAGGATCTG ATCCGCGGATTCCCTCAGAAGACGATCTTCGATTCGCTCGACGAGAATGGGCTCAGTTTTGGGATATATTACCAAAGTATCCCTGCTACTCTGTTCTTCA GCTCACTAAGGAAGCTGAAGTTCATATTCAATTTTCACGACTACACACTCAAATTCAAGTCCCACGCGAGGGAAGGGAAGCTCCCGAATTATGCCGTGAT TGAGCAGCGGTGGTACGACGTGCCGTTTGGCCTCGCCAACGACGACCACCCGTCCCACGACGTGTCGGAAGGGCAGAAGTTCGTGAAGGAGGTTTACGAG ATACTGAGAGCTAGTCCGCAGTGGAAAGAGATGGCATTGTTGATTACCTATGACGAACACGGCGGATTCTATGACCACGTCCCGACACCGGTCGCCGGCG TCCCCAGTCCTGATGGGATTGTCGGTCCAGATCCTTTTTACTTCCGGTTTGACCGCTTGGGTGTTCGTGTCCCGACTCTCTTGATTTCTCCGTGGATTGA CAGGACGACTGTGATCCACGAGCCTGATGGACCGACACCGACTTCCCAATTCGAACATTCTTCGGTCCCTGCCACGGTGAAGAAGCTCTTCAACCTGAAA TCTAACTTCTTGACCAAGAGGGATGCTTGGGCTGGTACTTTTGAGAGCTACTTTCACCTTCGCAGAACTCCCCGTGATGATTGCCCAGAGACGTTGCCTG AAGTGACACAAACTCTGAGGCCAGTGGGAGCAAATCCGGATGCAAAACTCTCAGAGTTCCAAATGGAACTAGTCCAGCTCGCGTCCCAGCTGAACGGTGA CTATGTGTTGAACACTTACCCCGATATTGGCAAGAGCATGACAGTTGGTGAAGCAAAAAAGTACACTGAAGGTGCAGTCCAGAGATTCCTGGAAGCTGGG AGGGCTGCACTAAAAGCCGGAGCTAACGAATCTGCCATTATCACTATGAGACCTGCCCTCACTAGCCGGATTCCGGTAGGGAACTCTGATAACTATCTAG AAGCCTATTAA
AA sequence Show only first row Show all	>Lus10040678 pacid=23157892 polypeptide=Lus10040678 locus=Lus10040678.g ID=Lus10040678.BGIv1.0 annot-version=v1.0 MDFRRRRRLLITALFLLCLVVSSQARDYEKLFNKHKIGGPIKTIVVLVMENRSFDHMLGWLKSTRPDIDGLTGTESNKISATDANSPEVFVSNDAIFVDS DPGHSFQAIREQIFGSNDSHRNPAPMNGFVQQAYNMSESMAKTVMSGFHPSRIPVFAKLANEFAVFDRWFASVPASTQPNRFYVHSATSHGATSNVRKDL IRGFPQKTIFDSLDENGLSFGIYYQSIPATLFFSSLRKLKFIFNFHDYTLKFKSHAREGKLPNYAVIEQRWYDVPFGLANDDHPSHDVSEGQKFVKEVYE ILRASPQWKEMALLITYDEHGGFYDHVPTPVAGVPSPDGIVGPDPFYFRFDRLGVRVPTLLISPWIDRTTVIHEPDGPTPTSQFEHSSVPATVKKLFNLK SNFLTKRDAWAGTFESYFHLRRTPRDDCPETLPEVTQTLRPVGANPDAKLSEFQMELVQLASQLNGDYVLNTYPDIGKSMTVGEAKKYTEGAVQRFLEAG RAALKAGANESAIITMRPALTSRIPVGNSDNYLEAY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07230		NPC1	non-specific phospholipase C1 ...		Lus10040678 [exp]	0	1
AT3G04350			Plant protein of unknown funct...		Lus10027952 [exp]	3.5	0.8988
AT5G06710	HD	HAT14	homeobox from Arabidopsis thal...		Lus10039644 [exp]	5.1	0.8963
AT5G44790		HMA7, RAN1	copper-exporting ATPase / resp...		Lus10036225 [exp]	7.1	0.8563
AT1G47330			CBS domain-containing protein ...		Lus10032715 [exp]	8.7	0.8816
AT5G63930			Leucine-rich repeat protein ki...		Lus10023680 [exp]	15.0	0.8729
AT5G24010			Protein kinase superfamily pro...		Lus10027509 [exp]	15.4	0.8008
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Lus10032290 [exp]	15.5	0.8571
AT3G53030		SRPK4	ser/arg-rich protein kinase 4 ...		Lus10020516 [exp]	16.4	0.8585
AT5G44790		HMA7, RAN1	copper-exporting ATPase / resp...		Lus10038364 [exp]	18.4	0.8673
AT3G22970			Protein of unknown function (D...		Lus10024840 [exp]	18.5	0.8748

Compare expression of checked genes

Lus10040678 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.