Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27230 115 / 1e-31 HTA2 histone H2A 2 (.1.2) AT5G54640 114 / 2e-31 ATHTA1, HTA1, RAT5 RESISTANT TO AGROBACTERIUM TRANSFORMATION 5, histone H2A 1, Histone superfamily protein (.1) AT1G51060 113 / 6e-31 HTA10 histone H2A 10 (.1) AT3G20670 112 / 1e-30 HTA13 histone H2A 13 (.1) AT1G08880 110 / 1e-29 HTA5 ,G-H2AX ,GAMMA-H2AX ,H2AXA histone H2A 5, gamma histone variant H2AX, GAMMA H2AX, Histone superfamily protein (.1) AT1G54690 110 / 1e-29 HTA3 ,G-H2AX ,GAMMA-H2AX ,H2AXB histone H2A 3, GAMMA H2AX, gamma histone variant H2AX (.1) AT2G45630 98 / 2e-24 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) AT5G59870 96 / 4e-24 HTA6 histone H2A 6 (.1) AT5G02560 92 / 1e-22 HTA12 histone H2A 12 (.1.2) AT5G27670 88 / 4e-21 HTA7 histone H2A 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006708 [exp] 159 / 3e-46 AT1G12550 358 / 4e-124 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) Lus10014133 [exp] 150 / 5e-43 AT1G12550 340 / 1e-116 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) Lus10039691 [exp] 118 / 1e-32 AT1G54690 249 / 1e-86 histone H2A 3, GAMMA H2AX, gamma histone variant H2AX (.1) Lus10027154 [exp] 118 / 1e-32 AT1G54690 249 / 1e-86 histone H2A 3, GAMMA H2AX, gamma histone variant H2AX (.1) Lus10042960 [exp] 117 / 3e-32 AT1G51060 243 / 2e-84 histone H2A 10 (.1) Lus10032464 [exp] 114 / 2e-31 AT1G51060 240 / 2e-83 histone H2A 10 (.1) Lus10002253 [exp] 111 / 3e-30 AT1G54690 244 / 9e-85 histone H2A 3, GAMMA H2AX, gamma histone variant H2AX (.1) Lus10003750 [exp] 109 / 2e-29 AT1G54690 239 / 7e-83 histone H2A 3, GAMMA H2AX, gamma histone variant H2AX (.1) Lus10028044 [exp] 105 / 1e-27 AT1G08880 238 / 4e-82 histone H2A 5, gamma histone variant H2AX, GAMMA H2AX, Histone superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G131400 [exp] 115 / 1e-31 AT1G51060 200 / 1e-67 histone H2A 10 (.1) Potri.001G415700 [exp] 115 / 1e-31 AT1G51060 174 / 1e-56 histone H2A 10 (.1) Potri.004G031300 [exp] 111 / 3e-30 AT1G08880 150 / 6e-48 histone H2A 5, gamma histone variant H2AX, GAMMA H2AX, Histone superfamily protein (.1) Potri.013G028900 [exp] 111 / 4e-30 AT1G54690 220 / 4e-75 histone H2A 3, GAMMA H2AX, gamma histone variant H2AX (.1) Potri.005G040800 [exp] 111 / 5e-30 AT1G54690 221 / 2e-75 histone H2A 3, GAMMA H2AX, gamma histone variant H2AX (.1) Potri.005G040700 [exp] 109 / 2e-29 AT1G08880 183 / 2e-60 histone H2A 5, gamma histone variant H2AX, GAMMA H2AX, Histone superfamily protein (.1) Potri.013G028800 [exp] 102 / 1e-26 AT1G08880 190 / 2e-63 histone H2A 5, gamma histone variant H2AX, GAMMA H2AX, Histone superfamily protein (.1) Potri.006G082300 [exp] 94 / 2e-23 AT5G02560 143 / 2e-44 histone H2A 12 (.1.2) Potri.005G026500 [exp] 93 / 5e-23 AT5G27670 145 / 2e-45 histone H2A 7 (.1) Potri.001G113250 [exp] 96 / 2e-22 AT1G12550 340 / 9e-117 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [flax] [poplar] Histone PF00125 [flax] [poplar] Histone Core histone H2A/H2B/H3/H4 CL0325 [flax] [poplar] Form_Glyc_dh PF00389 [flax] [poplar] 2-Hacid_dh D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10040679 pacid=23157665 polypeptide=Lus10040679 locus=Lus10040679.g ID=Lus10040679.BGIv1.0 annot-version=v1.0 ATGGCATGTCCTCGTGCTGCCTTCACAGTGGTGAGGCAAATTGGACATAGCCTCTGCAAATTACAAGGTGAAGTTTTACGGTGGTGGTCGGGCAGCGACA ACGGGAGGTTTTTGAGGAGTGCCAATTGTACGCATATTGACTCACATACGTTATCCGCCACCGCTGCCCTGTGCGTCGGACCTCCGCCGCCTGTCACGTC CGATTTCCTCTATCGCTTTCCCTCCGTGAGGATCGTCGTCTGCTCAAGCGTTGGACTCGACCACGTTGGCCTCGCCGAGTGTCGGGGGAGAGGCGTCGCC GTCACCAACGCCGGGTCCGCCTTCGCTGATGACGTGGCCGACTACGCCGTCGCGTTGCTGATTGACGTTTTGAGGAGCATTTCGGCGGGTGATCGGTACG TTCGCGCCGGCTGCTGGCCCATTAAAGGAGATTATCCTCTCGGCTCCAAGGTTTGTGCCTCTTCGATCTCCCTTCCCCTGCGACAAAAGGTGGTTATGGT TCAACGACTCACTTCTCACGTTCTTGCTCGTCATCAGCAGCTAGCAGGTTCGCCTTTCTCTTTAATCAACATCTCTGCTTTCCACTCCATGGTCTCTGAT TCATTTGCATGTGCTTCGTCTTTCATACTTTATCTCATCAATTGTTGCGTTATTGCGTATGTTCTCTTCATCTTCTCGAGAGAGGCTTTTTGTGGTTTAT CGTTTGGATCTCTAAGTTTTCTGTTGGCTGCCGAGGTTCTGGAACTGGGTGGGAATGCTGCCAGAGATAACAAGAAGAGTCGGATCGTCCCGAGGCACAT CCAATTGGCGGTGAGGAACGATGAGGAGCTGAGCAAGCTTGTGGGATCGGTGACGATCGCCAACGGAGGAGGTCTTCCCAACATCCATAACATTCTCCTA CCTAAGAGGGCCGGCGGGATCTGGACTTGA
AA sequence Show only first row Show all	>Lus10040679 pacid=23157665 polypeptide=Lus10040679 locus=Lus10040679.g ID=Lus10040679.BGIv1.0 annot-version=v1.0 MACPRAAFTVVRQIGHSLCKLQGEVLRWWSGSDNGRFLRSANCTHIDSHTLSATAALCVGPPPPVTSDFLYRFPSVRIVVCSSVGLDHVGLAECRGRGVA VTNAGSAFADDVADYAVALLIDVLRSISAGDRYVRAGCWPIKGDYPLGSKVCASSISLPLRQKVVMVQRLTSHVLARHQQLAGSPFSLINISAFHSMVSD SFACASSFILYLINCCVIAYVLFIFSREAFCGLSFGSLSFLLAAEVLELGGNAARDNKKSRIVPRHIQLAVRNDEELSKLVGSVTIANGGGLPNIHNILL PKRAGGIWT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45630			D-isomer specific 2-hydroxyaci...		Lus10040679 [exp]	0	1
AT2G28630		KCS12	3-ketoacyl-CoA synthase 12 (.1...		Lus10015222 [exp]	3.9	0.6583
AT1G55140			Ribonuclease III family protei...		Lus10015626 [exp]	6.1	0.7455
AT2G19800		MIOX2	myo-inositol oxygenase 2 (.1)		Lus10006198 [exp]	8.5	0.7192
AT1G07110		FKFBP, ATF2KP, ...	"fructose-2,6-bisphosphatase",...		Lus10026380 [exp]	14.0	0.7308
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10025232 [exp]	18.0	0.7225
					Lus10015768 [exp]	18.7	0.7015
AT4G28570			Long-chain fatty alcohol dehyd...		Lus10003621 [exp]	34.8	0.6671
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10009847 [exp]	35.7	0.6967
AT4G16730		AtTPS02	terpene synthase 02 (.1)		Lus10033643 [exp]	36.9	0.6550
AT3G44380			Late embryogenesis abundant (L...		Lus10020628 [exp]	50.4	0.6264

Compare expression of checked genes

Lus10040679 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.