Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29760 887 / 0 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 562 / 0 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G14820 540 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22690 531 / 2e-178 unknown protein AT2G22410 516 / 9e-175 SLO1 SLOW GROWTH 1 (.1) AT5G66520 488 / 1e-164 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G22070 491 / 2e-163 pentatricopeptide (PPR) repeat-containing protein (.1) AT3G12770 484 / 5e-162 MEF22 mitochondrial editing factor 22 (.1) AT4G37380 480 / 3e-161 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48910 480 / 4e-161 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018223 [exp] 1360 / 0 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029436 [exp] 553 / 0 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033026 [exp] 541 / 0 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030053 [exp] 517 / 1e-174 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031423 [exp] 503 / 1e-169 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010909 [exp] 497 / 2e-167 AT5G66520 537 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016425 [exp] 500 / 5e-167 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10029344 [exp] 492 / 5e-166 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024971 [exp] 483 / 2e-162 AT4G37380 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G044700 [exp] 969 / 0 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G031600 [exp] 640 / 0 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G086200 [exp] 581 / 0 AT4G14820 840 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G071800 [exp] 575 / 0 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G040100 [exp] 545 / 0 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G105700 [exp] 544 / 0 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G128900 [exp] 530 / 8e-180 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G019500 [exp] 525 / 3e-178 AT2G22410 791 / 0.0 SLOW GROWTH 1 (.1) Potri.005G011000 [exp] 527 / 3e-177 AT1G08070 572 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G245300 [exp] 520 / 1e-173 AT3G22690 570 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10040680 pacid=23157818 polypeptide=Lus10040680 locus=Lus10040680.g ID=Lus10040680.BGIv1.0 annot-version=v1.0 ATGGCAACTCTGGGTCTCAATCCTCTGCCTCCGCACCTCAGCCCGACTCCGGCCTCTGCAACCGCCACCAACGTCGGCGACCGAGCTCTCTTCCAGCAAT GTACGAGTTTTAAGCAGCTGAAGCAAATCCACGCTCAAATGCTCCGTACCAACAAACTTCACGATCCTTACGCCGCCAGCGAACTCTTCACAGCCGCTGC CTTTTCTTCATTCTCCGCCCTCGACTATGCCCGCAAGGTGTTCGACCAAATTCCCCAACCAAACCTCTACTCGTGGAACATCCTAATTCGCGCCTTGGCT ACAAGCTCCGACCCAATCCAGAGCGTTCTCGTGTTCATCCGCATGCTCCACGATAGCCCTTTCGGTCCCAACAAGTTTACTTTCCCGGTCCTCATTAAAG CAGTTGCGGAACGTCGTTGCTTTCTGGTAGGAAAGGCAGTACATGGAATGGCGATTAAGACCTCGTTTGGGGACGACGTGTTTGTTTTGAACTCGCTTAT ACACTTCTACGCCTCTTGTGGCCATCTAGATTTGGCTTACTTGGTGTTTGAGATGATTGAAGGTAATAATAAAGATATTGTTTCTTGGAATTCGATGGTG ACAGGGTTTGTTCAAGGTGGATATCCAGACAAGGCTTTGGATTTGTTTGAGAGGATGCGAAATGAAGGTGTTCATCCTAATGCTGTGACAATGGTGAGTG TCATGTCTGCCTGCGCAAAGACGATGAATTTGACGCTTGGGAGAAAGGTTTGCGACTATATCGATAGAAATGAGATGATGATGAATCTGAATGTGTGCAA TGCGACGATAGATATGTTTGTGAAATGTGGGGAGGTGGAGATTGCAAGAGGATTGTTTGATAACATGGAGAAAAGAGATGTCGTTTCGTGGACAACGATT ATTGATGGCTATGCCAAAATGTCCGAACATGGAATAGCTCGGGACATTTTTGATTCCATGCCTAGGAAAGATATTCCTGCCTGGAATGTGCTGATATCTG GATATGAACAGAGTGGCAGACCAAAGGAAGCTCTGGCGATTTTCCGCGAGTTGCAGTTGACCAAGTCGGGTGCTAGACCGGACCAAGTTACGCTTCTGAG CACCTTGTCGGCTTGTGCTCAGTTGGGAGCAATGGACATAGGTGAGTGGATCCATGGATACATCAAGAAGGAAAGAATCCAGCTTAATCGTAATCTTGCA ACCTCTCTTATTGATATGTACTCCAAGAGCGGTGATGTTGAAAAGGCGATTGAAGTATTTCATTCGATTGGTAACAAAGATGTGTTTGTTTGGAGTGCGA TGATTGCTGGGTTGGCAATGCATGGCCGTGGCGAAGCTGCTATAGAGTTGTTCCTTGATATGCAAGAAACTCAGGTGAAGCCGAATTCTGTAACTTTCAC TAATTTGTTATGCGCGTGTAGTCATTCGGGACTGGTTGATGAAGGGAAGAGATTGTTTGATGAAATGGAGCAAGTCTATGGCGTTGTGCCCGAAACAAAG CATTATTCGTGTATGGTTGACGTTCTTGGACGAGCCGGTCATTTGGAAGAGGCACTGAAGTTTATAGAAGGCATGCCATTAGCTCCGAGTGCTTCAGTTT GGGGAGCTTTGCTCGGTGCCTGCTGCATTCATGGCAATCTCGAGCTTGCTGAGAAGGCATGTAGCCGTTTGCTCGAGATCGAACCTGGAAATCATGGGGC GTATGTACTCTTATCGAACTTATATGCCAAAACCGGGGATTGGGAAGGTGTGTCCGAGTTAAGGCAGCAAATGAGAGATTCCGGACTGAAGAAAGAAACA GGTTGCAGCTCGATCGAGATTGATGGTACCGTTCACGAGTTCATCGTGGGAGATAACGCCCATCCTCTGTCGAGAGACATCTACGCGAAGTTGGACGAGA TCATGGCTAGACTAAGATCACACGGTTATGTGGCGAACACATTGTGCATGCTGCAATTCGTGGAAGAAGAAGAGATGAAGGAGAAGGCTCTTAAACTTCA CAGCGAAAAGATGGCGATTGCTTTCGGGCTCATCAGAGCGGATTCTCAGCAGGCTATCAGGATTGTGAAGAACCTTCGTGTTTGCAGGGATTGTCACACG GTTGCGAAGATGGTATCTAAGGTCTACGGAAGGGATATTGTGCTGAGGGATCGGTACAGGTTCCACCATTTCAGTGGGGGGCATTGCTCGTGTCAAGATT ACTGGTGA
AA sequence Show only first row Show all	>Lus10040680 pacid=23157818 polypeptide=Lus10040680 locus=Lus10040680.g ID=Lus10040680.BGIv1.0 annot-version=v1.0 MATLGLNPLPPHLSPTPASATATNVGDRALFQQCTSFKQLKQIHAQMLRTNKLHDPYAASELFTAAAFSSFSALDYARKVFDQIPQPNLYSWNILIRALA TSSDPIQSVLVFIRMLHDSPFGPNKFTFPVLIKAVAERRCFLVGKAVHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSWNSMV TGFVQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRKVCDYIDRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTI IDGYAKMSEHGIARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMDIGEWIHGYIKKERIQLNRNLA TSLIDMYSKSGDVEKAIEVFHSIGNKDVFVWSAMIAGLAMHGRGEAAIELFLDMQETQVKPNSVTFTNLLCACSHSGLVDEGKRLFDEMEQVYGVVPETK HYSCMVDVLGRAGHLEEALKFIEGMPLAPSASVWGALLGACCIHGNLELAEKACSRLLEIEPGNHGAYVLLSNLYAKTGDWEGVSELRQQMRDSGLKKET GCSSIEIDGTVHEFIVGDNAHPLSRDIYAKLDEIMARLRSHGYVANTLCMLQFVEEEEMKEKALKLHSEKMAIAFGLIRADSQQAIRIVKNLRVCRDCHT VAKMVSKVYGRDIVLRDRYRFHHFSGGHCSCQDYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29760		OTP81	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10040680 [exp]	0	1
AT2G29760		OTP81	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10018223 [exp]	1.0	0.9069
AT2G46420			Plant protein 1589 of unknown ...		Lus10004015 [exp]	2.8	0.8974
AT2G40840		DPE2	disproportionating enzyme 2 (....		Lus10035408 [exp]	4.0	0.8651
AT2G40840		DPE2	disproportionating enzyme 2 (....		Lus10031010 [exp]	8.2	0.8363
AT5G17790		VAR3	VARIEGATED 3, zinc finger (Ran...		Lus10013630 [exp]	9.9	0.8627
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Lus10016195 [exp]	10.7	0.8694
AT5G35170			adenylate kinase family protei...		Lus10036326 [exp]	13.2	0.8766
AT2G38680			5'-nucleotidases;magnesium ion...		Lus10008973 [exp]	14.5	0.8318
AT5G48300		APS1, ADG1	ADP-GLUCOSE PYROPHOSPHORYLASE ...		Lus10016069 [exp]	15.3	0.8606
AT5G03880			Thioredoxin family protein (.1...		Lus10017034 [exp]	15.4	0.8738

Compare expression of checked genes

Lus10040680 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.