Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29700 230 / 3e-79 ATPH1 pleckstrin homologue 1 (.1) AT5G05710 220 / 3e-75 Pleckstrin homology (PH) domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018222 [exp] 236 / 5e-80 AT2G29700 190 / 1e-61 pleckstrin homologue 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G044500 [exp] 258 / 3e-90 AT2G29700 234 / 1e-80 pleckstrin homologue 1 (.1) Potri.001G250400 [exp] 255 / 5e-89 AT2G29700 229 / 1e-78 pleckstrin homologue 1 (.1) Potri.008G066700 [exp] 221 / 3e-75 AT5G05710 239 / 2e-82 Pleckstrin homology (PH) domain superfamily protein (.1) Potri.010G190500 [exp] 211 / 1e-71 AT5G05710 232 / 1e-79 Pleckstrin homology (PH) domain superfamily protein (.1) Potri.009G011200 [exp] 41 / 0.0001 AT2G28320 1071 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [flax] [poplar] PH PF00169 [flax] [poplar] PH PH domain
Representative CDS sequence Show only first row Show all	>Lus10040681 pacid=23157805 polypeptide=Lus10040681 locus=Lus10040681.g ID=Lus10040681.BGIv1.0 annot-version=v1.0 ATGGAATCCCTCCTCCGAAGCATAACCCGGCAGGACCCGAACCCAGAGGACTACACCGACATCGACTTCTGGACCAACCCGGAGCGATCCGGGTGGCTCA CCAAGCAAGGCGAGTACATCCGCACCTGGAGGCGCCGCTGGTTCATCCTCAAGCAAGGGAAGCTCCTCTGGTTCAAGGACAGCATCGTCACCCGCGGCTC CGTCCCTCGCGGAGTCGTCGCCGTCGGCCAGTGCCTCACTGTCAAGGGCGCCGAGGACGTCCTCAACAAGCCTTTCGCCTTCGAGCTCTCCACCAATAAC GACACCATGTACTTCATCGCCGATTCCGAGAAGGAGAAGGAAGAGTGGATCAACTCGATCGGGAGGTCGATCGTGCAGCACTCCAGGTCCGTCACCGATT CCGAAGTCGTCGATTACGACAGCACCAGGCGGTGA
AA sequence Show only first row Show all	>Lus10040681 pacid=23157805 polypeptide=Lus10040681 locus=Lus10040681.g ID=Lus10040681.BGIv1.0 annot-version=v1.0 MESLLRSITRQDPNPEDYTDIDFWTNPERSGWLTKQGEYIRTWRRRWFILKQGKLLWFKDSIVTRGSVPRGVVAVGQCLTVKGAEDVLNKPFAFELSTNN DTMYFIADSEKEKEEWINSIGRSIVQHSRSVTDSEVVDYDSTRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29700		ATPH1	pleckstrin homologue 1 (.1)		Lus10040681 [exp]	0	1
AT1G55365			unknown protein		Lus10010316 [exp]	1.4	0.8418
AT1G16840			unknown protein		Lus10035733 [exp]	1.7	0.8505
AT5G65200		ATPUB38	ARABIDOPSIS THALIANA PLANT U-B...		Lus10043464 [exp]	3.5	0.8226
AT3G18280			Bifunctional inhibitor/lipid-t...		Lus10017616 [exp]	4.2	0.8409
AT1G26920			unknown protein		Lus10037195 [exp]	5.7	0.8189
AT2G39705		RTFL8, DVL11	DEVIL 11, ROTUNDIFOLIA like 8 ...		Lus10024323 [exp]	8.9	0.8376
AT4G16400			unknown protein		Lus10016614 [exp]	11.8	0.7991
AT4G00550		DGD2	digalactosyl diacylglycerol de...		Lus10040927 [exp]	12.3	0.7952
AT5G19590			Protein of unknown function, D...		Lus10033088 [exp]	14.7	0.7744
AT5G23140		NCLPP7, NCLPP2,...	nuclear-encoded CLP protease P...		Lus10013434 [exp]	20.4	0.8352

Compare expression of checked genes

Lus10040681 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.