Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29670 458 / 8e-157 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G07280 445 / 2e-151 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) AT3G47080 355 / 4e-117 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G17940 82 / 4e-17 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G20190 81 / 1e-16 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G04530 68 / 2e-12 TPR4 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G32340 65 / 2e-11 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G80130 65 / 3e-11 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018221 [exp] 1006 / 0 AT2G29670 486 / 1e-167 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10005863 [exp] 632 / 0 AT2G29670 462 / 6e-158 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001206 [exp] 628 / 0 AT1G07280 457 / 4e-156 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10043203 [exp] 120 / 1e-32 AT2G29670 102 / 1e-26 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025981 [exp] 101 / 8e-23 AT2G29670 146 / 8e-39 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002166 [exp] 82 / 4e-17 AT5G20190 192 / 8e-60 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014468 [exp] 82 / 2e-16 AT1G04530 177 / 1e-51 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10023721 [exp] 82 / 2e-16 AT1G04530 171 / 4e-49 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030103 [exp] 79 / 6e-16 AT5G20190 179 / 1e-54 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G250100 [exp] 618 / 0 AT2G29670 499 / 5e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G044200 [exp] 606 / 0 AT2G29670 484 / 5e-166 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G191600 [exp] 339 / 1e-110 AT2G29670 328 / 3e-106 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G130100 [exp] 87 / 1e-18 AT5G20190 180 / 5e-55 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G256900 [exp] 86 / 7e-18 AT4G17940 125 / 2e-33 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G068200 [exp] 83 / 2e-17 AT5G20190 167 / 6e-50 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G130300 [exp] 81 / 1e-16 AT5G20190 166 / 2e-49 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G140500 [exp] 78 / 1e-15 AT4G17940 196 / 9e-62 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G065400 [exp] 76 / 2e-14 AT1G04530 160 / 5e-46 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G172200 [exp] 76 / 3e-14 AT1G04530 137 / 1e-36 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040683 pacid=23157633 polypeptide=Lus10040683 locus=Lus10040683.g ID=Lus10040683.BGIv1.0 annot-version=v1.0 ATGGAAGCATCTACGACTTGTTTCCAGTGGACGAAGCCGACCAGACCTCACTCTCCGTCTTCCTACCGGAACCTAGCCTCTGCGGTTACGTCGTCGAAAC GGCGATGCCGGAGGGATTGCGAGACGACTATCGTCTGCAGTTACGTGCATAGACTAGACAAATCGGGCTCGTCGAAGCTTCAGAGAGTGCAGTCTAGTGT GTATGCCAGGCCGAACAGGGCACATACGCTTAAAAGAGCTTGCAGCGCGAGCTTAAACGCCTTCTCGGATGAGGAGTTCTCGAAGGAAATCCAAGAGTTG GCTCTCCGATTTCAAAATTCAAGTGACGGGCAACAAAGTGGTGACACCGTGGATTTTGAATTGATGCAAGGTTTTCACTCCAGCAGAGAAGATTCTGCAA ATCTGGTGCATGATCACCGACGATTTCCTCTTGCATCGGTGGAGCCCCTGTGGCCGGAGATCAGTCGAGAGTCGCCTGTTTGGCACGATGTAATTCCGGC CAGCATTGAGCGGAAGGCAAACAGCGTAGATATCCCTCTGTCGCTACGAATGATAAAGAGAAAGATGCAGTGGCAGGAAGGATTCAGAGAGGCAGGGGAA TCGGCTTGTTCTTCGGTGAAGAAGGCGTTTTCCTCCATGGTGTTTATGATCCAGGAGCTCCATAGCTACACGATGCTAATGCGAGAGTTCATCTTCACCG AAGATTTGCAAGGAATCCTGGCCCGTGTCCAGGAAGAGATGCACGCTTCCTTCGTTTGGTTGTTTCAGCAGGTGTTCTCTCACACACCAGCACTCATGGT ATCCGTGATGATTCTCCTTGCAAACTTCACCGTCTATTCCATGGGCACTCAGGCTGCATTCGCAGCTCCACATACAATCGAAACCGTATCAGTTCTAGAA ACTCGATCTCACGAGAAGGATCACATGGTGAAGACATTTGCAATGTCCTCTCCAGGTGACAAATCAGCTTACATCGGAGGAATCAACGGAGGTGGTGGTG GCAAGGTTAAACCGGTGGGCAGCGGGACAGAAGGGGATGGTTCGTTTGATCGGTCTGATGAACTAAGAACTATAGTCCCTGATAGTGCTTCGGAGTTGTC AGCATTAGGGACAAGCAGAGAGGCAGAGCAGGAAATTAACATGGAAGAAAATGCTTCTGAGCTATGGAATTCAGTAGTGGAGGAAGCCTCAAGCATCAAG AGTATTAAGCTTAATCACGAGGGTATCGATAGATTGGTTGAAGCGAAAATAGAATCCGATGATTGCAAGGACTATCTTAGAACGGAGCAACTATACCAAA CGGGACTCGCTGAAGAGCCTAACAACCCTCTCCTCCTCGCCAATTATGCACAGTTCCTCTGCGTCGTTTCCCACGATTACGATAGGGCGGAGGAATACTA CAAGAGGGCAGTCGGAACGGAGCCGGCGGATGCAGAGGCGTTCAACAAATACGCCAATTTCTTGTGGAAAGTGAGAGACGATTTGTGGGCGGCGGAGGAG ACTTTCTTGGAAGCCATTGCGGCCGATCCGACGAACGCATTCTACGCTGCTAATTACGCCAGCTTCTTGTGGACGACCGGAGGCGAGGACACGTGTTTCC CACTCTCGGATAATGCGCAGCAGGTCTAA
AA sequence Show only first row Show all	>Lus10040683 pacid=23157633 polypeptide=Lus10040683 locus=Lus10040683.g ID=Lus10040683.BGIv1.0 annot-version=v1.0 MEASTTCFQWTKPTRPHSPSSYRNLASAVTSSKRRCRRDCETTIVCSYVHRLDKSGSSKLQRVQSSVYARPNRAHTLKRACSASLNAFSDEEFSKEIQEL ALRFQNSSDGQQSGDTVDFELMQGFHSSREDSANLVHDHRRFPLASVEPLWPEISRESPVWHDVIPASIERKANSVDIPLSLRMIKRKMQWQEGFREAGE SACSSVKKAFSSMVFMIQELHSYTMLMREFIFTEDLQGILARVQEEMHASFVWLFQQVFSHTPALMVSVMILLANFTVYSMGTQAAFAAPHTIETVSVLE TRSHEKDHMVKTFAMSSPGDKSAYIGGINGGGGGKVKPVGSGTEGDGSFDRSDELRTIVPDSASELSALGTSREAEQEINMEENASELWNSVVEEASSIK SIKLNHEGIDRLVEAKIESDDCKDYLRTEQLYQTGLAEEPNNPLLLANYAQFLCVVSHDYDRAEEYYKRAVGTEPADAEAFNKYANFLWKVRDDLWAAEE TFLEAIAADPTNAFYAANYASFLWTTGGEDTCFPLSDNAQQV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29670			Tetratricopeptide repeat (TPR)...		Lus10040683 [exp]	0	1
AT4G30080	ARF	ARF16	auxin response factor 16 (.1)		Lus10026510 [exp]	1.0	0.8878
AT2G16980			Major facilitator superfamily ...		Lus10023994 [exp]	7.7	0.8527
AT2G20610		RTY1, RTY, HLS3...	SUPERROOT 1, ROOTY 1, ROOTY, H...		Lus10018626 [exp]	9.2	0.8571
AT4G33040			Thioredoxin superfamily protei...		Lus10013519 [exp]	12.6	0.8450
AT4G13250		NYC1, NYC	NON-YELLOW COLORING 1, NAD(P)-...		Lus10023644 [exp]	14.4	0.8134
					Lus10008674 [exp]	17.0	0.8217
AT5G63800		MUM2, BGAL6	MUCILAGE-MODIFIED 2, beta-gala...		Lus10033502 [exp]	17.5	0.8126
AT1G58520		RXW8	lipases;hydrolases, acting on ...		Lus10004550 [exp]	19.5	0.8070
AT4G15530		PPDK	pyruvate orthophosphate dikina...		Lus10012770 [exp]	20.6	0.8267
AT1G34060			Pyridoxal phosphate (PLP)-depe...		Lus10007085 [exp]	20.6	0.8293

Compare expression of checked genes

Lus10040683 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.