Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29660 295 / 5e-97 C2H2ZnF zinc finger (C2H2 type) family protein (.1) AT4G27240 154 / 3e-42 C2H2ZnF zinc finger (C2H2 type) family protein (.1) AT5G54630 154 / 6e-42 C2H2ZnF zinc finger protein-related (.1) AT1G75710 153 / 7e-42 C2H2ZnF C2H2-like zinc finger protein (.1) AT1G11490 115 / 1e-28 C2H2ZnF zinc finger (C2H2 type) family protein (.1) AT4G22560 100 / 1e-23 unknown protein AT4G12450 87 / 4e-19 unknown protein AT1G62520 74 / 1e-14 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018219 [exp] 529 / 0 AT2G29660 323 / 4e-108 zinc finger (C2H2 type) family protein (.1) Lus10024333 [exp] 166 / 2e-48 AT1G75710 384 / 3e-133 C2H2-like zinc finger protein (.1) Lus10034522 [exp] 161 / 4e-45 AT1G75710 450 / 1e-156 C2H2-like zinc finger protein (.1) Lus10033148 [exp] 161 / 9e-45 AT1G75710 442 / 3e-153 C2H2-like zinc finger protein (.1) Lus10043080 [exp] 158 / 1e-43 AT5G54630 566 / 0.0 zinc finger protein-related (.1) Lus10028083 [exp] 149 / 2e-40 AT1G75710 284 / 4e-91 C2H2-like zinc finger protein (.1) Lus10025632 [exp] 148 / 6e-40 AT1G75710 284 / 2e-91 C2H2-like zinc finger protein (.1) Lus10018388 [exp] 121 / 2e-30 AT5G54630 336 / 5e-112 zinc finger protein-related (.1) Lus10032250 [exp] 110 / 2e-27 AT1G62520 246 / 2e-81 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G249900 [exp] 355 / 2e-120 AT2G29660 351 / 1e-119 zinc finger (C2H2 type) family protein (.1) Potri.009G043900 [exp] 349 / 5e-118 AT2G29660 332 / 4e-112 zinc finger (C2H2 type) family protein (.1) Potri.005G173400 [exp] 176 / 2e-50 AT1G75710 291 / 3e-94 C2H2-like zinc finger protein (.1) Potri.005G238300 [exp] 158 / 5e-44 AT1G75710 478 / 5e-168 C2H2-like zinc finger protein (.1) Potri.002G087500 [exp] 158 / 6e-44 AT1G75710 294 / 2e-95 C2H2-like zinc finger protein (.1) Potri.002G023200 [exp] 154 / 2e-42 AT1G75710 439 / 1e-152 C2H2-like zinc finger protein (.1) Potri.011G131300 [exp] 152 / 1e-41 AT5G54630 509 / 3e-179 zinc finger protein-related (.1) Potri.001G415600 [exp] 150 / 5e-41 AT5G54630 520 / 0.0 zinc finger protein-related (.1) Potri.004G030800 [exp] 139 / 6e-37 AT5G54630 385 / 3e-131 zinc finger protein-related (.1) Potri.001G121600 [exp] 107 / 2e-26 AT4G22560 258 / 5e-86 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040685 pacid=23157640 polypeptide=Lus10040685 locus=Lus10040685.g ID=Lus10040685.BGIv1.0 annot-version=v1.0 ATGGCCAGCATATCCTCATCAGTCATCAACCGATTCCTTTCCCTCTTCCTCATCCTCCTCCACCTCGGCTGCTTCGTCTTCCTCTCCCGTGACCAATCAG CTTCCCACCCCACAAGAAAACGCAAATCATCATCATCCGACGACGACTACAAGGACGACCATTCTCCTCCGGCAGCGTCTCGCCGGAGACGATCCTCCCC TCTACTCTCTTCCTCTTGGTCATACATTAAGCGAGTTTTTACCTGTAAATCGATTTATAACTCCCTTCCGCCTCCCCTTCCGCCGCCGATTTCCCCTGCT CAGACCTCCGCCAGATCTTCTCAGAAATCCTCATTATTAATCGCCATCGAAAACGATGCCGTTTTCCCCGCCAAAATCAGTCATCATCCGCCTCATCCGA TCAGCGCGTCGCCGGAATCCGACATCTCCTCCGCCGACCGATTCCCGCTTCGAAACGACATCTTCCCTTGCACTGTCTGCGGCGAGGTCCTCCAGAAGCC GCACATACTCGAGCAGCATTTAGCGGTCAAGCACGCCGTGTCCGAGCTCCGAGACGGCGATTCCGGGAACAACATCGTTCGGATTATATTCAAAGCAGGG TGGAACTCTGCTACCAAATCCCCTGAAATCCATCGGATCCTCAAGATCCACAATAGCCCCAAGATTCTGACGCGGTTCGAAGAGTACAGGGAGTTTGTCA AATCCAAAGCCTCCAAAATCTCAAACGTTGCCGGCGGCGGCGGGAGAATCAGAGACGAGCGATGCATAGCCGATGGAAACGAGCTCCTGAGATTCCACTG CGCAACATTCGTCTGCGATCTAGGTCTGAACGGCGGCGGCGGATGCGGAGCAGCAGGATGGCCGACGTCGAGCCTGTGCAATCAGCAGTACTGCAGCGTG TGCGGGATAATCAAGTCCGGATTCTCCCCGAAGATGGACGGGATTTCGACTCTGTCGACGAGCTGGCGGGCGCACGCGGCAATCCCGGCGGAGATCGAGG AGGAGTTTAAGTTCATGAACATCAAACGGGCGATGCTGGTCTGCCGGGTTATAGCAGGTCGGGTCGGGTCCGAGATGGAGGAAGCGGATAAAGAAGGATG CGGGTACGATTCTTTGGTGGGAAGAGGTAGAGGAGGAGGCGGTGGGGTCCACCTAGGCAATCTGGACGATGAGGAGCTGCTTGTTTTTAATCCCAAGGCT GTGCTTCCTTGCTTTGTGATTGTATATACGTGTGAAGCGTGA
AA sequence Show only first row Show all	>Lus10040685 pacid=23157640 polypeptide=Lus10040685 locus=Lus10040685.g ID=Lus10040685.BGIv1.0 annot-version=v1.0 MASISSSVINRFLSLFLILLHLGCFVFLSRDQSASHPTRKRKSSSSDDDYKDDHSPPAASRRRRSSPLLSSSWSYIKRVFTCKSIYNSLPPPLPPPISPA QTSARSSQKSSLLIAIENDAVFPAKISHHPPHPISASPESDISSADRFPLRNDIFPCTVCGEVLQKPHILEQHLAVKHAVSELRDGDSGNNIVRIIFKAG WNSATKSPEIHRILKIHNSPKILTRFEEYREFVKSKASKISNVAGGGGRIRDERCIADGNELLRFHCATFVCDLGLNGGGGCGAAGWPTSSLCNQQYCSV CGIIKSGFSPKMDGISTLSTSWRAHAAIPAEIEEEFKFMNIKRAMLVCRVIAGRVGSEMEEADKEGCGYDSLVGRGRGGGGGVHLGNLDDEELLVFNPKA VLPCFVIVYTCEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29660	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10040685 [exp]	0	1
AT3G43270			Plant invertase/pectin methyle...		Lus10017375 [exp]	1.7	0.8799
AT1G70590			F-box family protein (.1)		Lus10004621 [exp]	2.8	0.8396
AT2G01420		PIN4, ATPIN4	ARABIDOPSIS PIN-FORMED 4, Auxi...		Lus10012680 [exp]	2.8	0.8705
AT3G43270			Plant invertase/pectin methyle...		Lus10010170 [exp]	4.9	0.8675
AT2G39770		VTC1, SOZ1, GMP...	VITAMIN C DEFECTIVE 1, SENSITI...		Lus10040265 [exp]	7.5	0.8563
AT3G22540			Protein of unknown function (D...		Lus10010564 [exp]	8.5	0.8389
AT1G78230			Outer arm dynein light chain 1...		Lus10033444 [exp]	9.2	0.7972
AT1G07400			HSP20-like chaperones superfam...		Lus10016457 [exp]	11.2	0.8435
					Lus10010492 [exp]	14.3	0.8180
AT3G07470			Protein of unknown function, D...		Lus10039620 [exp]	16.7	0.8001

Compare expression of checked genes

Lus10040685 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.