Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29640 72 / 3e-15 JOSL JOSEPHIN-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018214 [exp] 114 / 8e-32 AT2G29640 227 / 8e-74 JOSEPHIN-like protein (.1) Lus10024670 [exp] 72 / 2e-16 AT1G01490 47 / 3e-07 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10027523 [exp] 47 / 8e-07 AT1G01490 77 / 3e-19 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10027524 [exp] 47 / 2e-06 AT1G01490 100 / 2e-25 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10039286 [exp] 46 / 4e-06 AT1G01490 97 / 2e-24 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10017520 [exp] 39 / 0.0005 AT1G01490 52 / 3e-09 Heavy metal transport/detoxification superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G249400 [exp] 85 / 8e-21 AT2G29640 230 / 2e-75 JOSEPHIN-like protein (.1) Potri.017G147500 [exp] 43 / 2e-05 AT1G01490 91 / 4e-24 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.004G073000 [exp] 42 / 3e-05 AT1G01490 96 / 5e-26 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.017G147200 [exp] 41 / 6e-05 AT1G01490 64 / 1e-13 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.017G147000 [exp] 40 / 0.0002 AT1G01490 61 / 2e-12 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.003G132200 [exp] 40 / 0.0003 AT1G01490 102 / 2e-28 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.017G147400 [exp] 39 / 0.0005 AT1G01490 74 / 2e-17 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.001G099500 [exp] 38 / 0.001 AT1G01490 105 / 2e-29 Heavy metal transport/detoxification superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF02099 [flax] [poplar] Josephin Josephin
Representative CDS sequence Show only first row Show all	>Lus10040691 pacid=23157571 polypeptide=Lus10040691 locus=Lus10040691.g ID=Lus10040691.BGIv1.0 annot-version=v1.0 ATGATTGCAAGGATCGTGGGTTCCGACATCAACATGAAGGAAAAAAAGCTGACGGTGATTGGGGAAGTGGATCCGGGGAAAGTATGGATGAAGCTTAAAT GGATATGTCACAGTACGATCATATCGGTGGAGGAGGGTTTCGAGGAGAGGGAAAAGGAAGAAGAAGAACAGAGGTTGAAGGAACAGGAAGAGAAGATTAG GGAAGAGGTGGAGCAGAATCTTTACGGCATGGGTGGTATTAACTATCATCAGATTCCTTACCAAGCTCCCTGTTACAGCAACAGTAACCCGCCCTATCGC TATCCCTATCCGACCCTGTGGCGAAACGGAGCTTCCACCATTGACTTAGAACACCCTCAGGGGAAACTGTACGGTATTGTGCTTAACGTTCCAGTTAGAA GGTACATTGCGCTGTGGAAAGGTAGGCACTGGGTAGCCATGAGGAAAGTTGATGGTGTTTGGTATAATTTGGGTAGTGATCTTAGGCGTGTTGATATTCT CATTCATGCTGTAAACTTTTATGCTATCGATGATTGA
AA sequence Show only first row Show all	>Lus10040691 pacid=23157571 polypeptide=Lus10040691 locus=Lus10040691.g ID=Lus10040691.BGIv1.0 annot-version=v1.0 MIARIVGSDINMKEKKLTVIGEVDPGKVWMKLKWICHSTIISVEEGFEEREKEEEEQRLKEQEEKIREEVEQNLYGMGGINYHQIPYQAPCYSNSNPPYR YPYPTLWRNGASTIDLEHPQGKLYGIVLNVPVRRYIALWKGRHWVAMRKVDGVWYNLGSDLRRVDILIHAVNFYAIDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29640		JOSL	JOSEPHIN-like protein (.1)		Lus10040691 [exp]	0	1
AT1G71050		HIPP20	heavy metal associated isopren...		Lus10042946 [exp]	3.2	0.9369
AT5G51810		AT2353, GA20OX2...	gibberellin 20 oxidase 2 (.1)		Lus10041390 [exp]	4.0	0.9014
					Lus10015218 [exp]	4.7	0.9260
AT3G12620			Protein phosphatase 2C family ...		Lus10003993 [exp]	5.5	0.8781
AT3G06060		TSC10A	TSC10A, NAD(P)-binding Rossman...		Lus10039501 [exp]	7.1	0.9027
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10000546 [exp]	8.0	0.8745
AT2G38870			Serine protease inhibitor, pot...		Lus10014740 [exp]	8.5	0.8696
AT3G06060		TSC10A	TSC10A, NAD(P)-binding Rossman...		Lus10039502 [exp]	8.9	0.8985
AT1G71050		HIPP20	heavy metal associated isopren...		Lus10032446 [exp]	10.7	0.8517
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10015092 [exp]	10.9	0.8768

Compare expression of checked genes

Lus10040691 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.