Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07310 167 / 3e-49 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT5G23950 90 / 3e-21 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G04360 57 / 5e-09 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT2G13350 56 / 9e-09 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT2G33320 51 / 7e-07 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT5G11100 49 / 3e-06 SYT4, NTMCTYPE2.2, ATSYTD ,NTMC2T2.2 ,NTMC2TYPE2.2 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT2G45760 46 / 1e-05 BAL, BAP2 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1) AT3G16510 41 / 0.0006 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005867 [exp] 235 / 9e-76 AT1G07310 206 / 3e-64 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10018213 [exp] 140 / 3e-40 AT1G07310 94 / 1e-22 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10039259 [exp] 107 / 8e-27 AT5G23950 160 / 3e-48 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10027502 [exp] 105 / 3e-26 AT5G23950 164 / 8e-50 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10003570 [exp] 59 / 2e-09 AT2G33320 222 / 7e-67 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10032780 [exp] 57 / 5e-09 AT2G33320 227 / 1e-70 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10008731 [exp] 44 / 0.0001 AT4G01200 222 / 3e-72 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10002155 [exp] 42 / 0.0002 AT4G01200 224 / 7e-73 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G249300 [exp] 221 / 7e-71 AT1G07310 224 / 1e-71 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.009G043300 [exp] 199 / 3e-62 AT1G07310 205 / 9e-64 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.008G064900 [exp] 162 / 1e-47 AT1G07310 150 / 1e-42 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.012G144600 [exp] 114 / 1e-29 AT5G23950 166 / 2e-50 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.013G048400 [exp] 56 / 8e-09 AT2G33320 211 / 6e-63 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.008G172300 [exp] 55 / 2e-08 AT2G33320 265 / 8e-82 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.010G065300 [exp] 55 / 4e-08 AT2G13350 261 / 6e-83 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.019G021300 [exp] 53 / 1e-07 AT3G04360 213 / 2e-65 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.013G018600 [exp] 42 / 0.0003 AT1G09070 157 / 5e-46 soybean gene regulated by cold-2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Lus10040692 pacid=23157884 polypeptide=Lus10040692 locus=Lus10040692.g ID=Lus10040692.BGIv1.0 annot-version=v1.0 ATGGGTTCCTACATTCCATTCGAGCTGGAGGTGACAATAGTCTCGGCGAAGCATCTGAAGAACGTGAGCTGGAAGAGCGGTGATCTGAAGCCCTACGCGA TCATCTACCTCGACGACTCCGATCACAAGCTAGCAACACACGCAGACGACTACGGCTCTACTCAACCCGTATGGAACGAGCGATTCACACTCCCGGTGAC CCGATCGATCGCCGATTCCGTCCTGACTCTGGAGATCTTTCACTCCAGGCCATCGGAAACTCCCAAGCCTCTTGTCGGCGCCGTGAAGATCCCTCTCTCC CAGATTCTCGACTCCAAACAGTCTCCGATGGTGGTCCGTGATATCGAGCTCATCCGTCCCTCCGGCCGTCCTCAAGGTAAGGCTCGCCTGAAGCTCGCTC TGAAAGAATGCCCCCTGCCTCCTCCGCCTTCACCTCGTCCTCCTATGCCTCCTCCTCCCCCGATTTTCCCACAGGTGGAGGATTACCATAATGCCCCTAA CTACGCTGATTTTTACGCCCGGACACCTACGCCTCTTCCCGCGTATCCGTACACTTACCCCGGCCAGTACGATTACTACGCGTCGGCTTATTACCCGCCG CAACCGCCTCTTCCTTCTCGGCCTTTGTACAGTCGTTTGTCCAGCTACACTCAGAGCGACCCTTCTGCTCCGGTTGAAGTATTGTCGCCTTACGATCACA AGCTGGTGCCCCCGCCGTTGACAAAAACGTCCGGTGTCTATGGAACATTAAGCGGACCGTCGGCTCCGGTGGACTATTCTTCTCCTTACGGTAATGGGAA AGTCGGAGGAGGAGGAGGAGAAGGAAGCGCCACGGAGCTCAGCAGTACTATGGGAAGGTTGAATCTTGAGGAGACATGGAGCAACTACGAGAAGGAGAAA GCTCCTGGAAGGGACAGTTACAGCTATCGGGACTATTGA
AA sequence Show only first row Show all	>Lus10040692 pacid=23157884 polypeptide=Lus10040692 locus=Lus10040692.g ID=Lus10040692.BGIv1.0 annot-version=v1.0 MGSYIPFELEVTIVSAKHLKNVSWKSGDLKPYAIIYLDDSDHKLATHADDYGSTQPVWNERFTLPVTRSIADSVLTLEIFHSRPSETPKPLVGAVKIPLS QILDSKQSPMVVRDIELIRPSGRPQGKARLKLALKECPLPPPPSPRPPMPPPPPIFPQVEDYHNAPNYADFYARTPTPLPAYPYTYPGQYDYYASAYYPP QPPLPSRPLYSRLSSYTQSDPSAPVEVLSPYDHKLVPPPLTKTSGVYGTLSGPSAPVDYSSPYGNGKVGGGGGEGSATELSSTMGRLNLEETWSNYEKEK APGRDSYSYRDY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07310			Calcium-dependent lipid-bindin...		Lus10040692 [exp]	0	1
AT3G15210	AP2_ERF	ATERF4, RAP2.5...	RELATED TO AP2 5, ethylene res...		Lus10029987 [exp]	1.0	0.9229
AT1G01840			unknown protein		Lus10041376 [exp]	3.3	0.8723
AT3G55780			Glycosyl hydrolase superfamily...		Lus10028258 [exp]	4.5	0.8595
AT1G15710			prephenate dehydrogenase famil...		Lus10011483 [exp]	4.6	0.8840
AT1G55890			Tetratricopeptide repeat (TPR)...		Lus10020073 [exp]	5.3	0.8811
AT3G02790	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10020216 [exp]	5.7	0.8794
AT3G22530			unknown protein		Lus10004901 [exp]	6.0	0.8772
AT5G57360		LKP1, FKL2, ADO...	ZEITLUPE, LOV KELCH PROTEIN 1,...		Lus10025470 [exp]	7.3	0.8990
AT5G28490		OBO2, LSH1	ORGAN BOUNDARY 2, LIGHT-DEPEND...		Lus10042565 [exp]	7.7	0.8807
AT2G45260			Plant protein of unknown funct...		Lus10001989 [exp]	11.0	0.8658

Compare expression of checked genes

Lus10040692 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.