Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07320 331 / 3e-113 EMB2784, RPL4 EMBRYO DEFECTIVE 2784, ribosomal protein L4 (.1.2.3.4) AT2G20060 100 / 6e-24 Ribosomal protein L4/L1 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018212 [exp] 493 / 7e-177 AT1G07320 332 / 8e-115 EMBRYO DEFECTIVE 2784, ribosomal protein L4 (.1.2.3.4) Lus10005427 [exp] 99 / 7e-24 AT2G20060 390 / 3e-138 Ribosomal protein L4/L1 family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G221100 [exp] 380 / 2e-132 AT1G07320 343 / 4e-119 EMBRYO DEFECTIVE 2784, ribosomal protein L4 (.1.2.3.4) Potri.004G004800 [exp] 114 / 7e-29 AT2G20060 465 / 1e-166 Ribosomal protein L4/L1 family (.1) Potri.006G270501 [exp] 64 / 8e-13 AT2G20060 131 / 3e-39 Ribosomal protein L4/L1 family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00573 [flax] [poplar] Ribosomal_L4 Ribosomal protein L4/L1 family
Representative CDS sequence Show only first row Show all	>Lus10040693 pacid=23157660 polypeptide=Lus10040693 locus=Lus10040693.g ID=Lus10040693.BGIv1.0 annot-version=v1.0 ATGTCAGCCACCGTGACAAGACCGCCGACGGCGGCTCTATCCAGCTTCTCCTCCTCATTCTTCAGCTGCTCTTCCAGAATTCAGCTCAAGAAGCTAATTC CACTCTGCAATCGAAGATCCAATTCCACGAAATTCACAATCTCCTGCGAAGTCGCAACCCTCCCTATCTTCAACTTCACCGGCGAGAAGGTCGGCGAAAC CGTCCTCGACATAAAATCCGCACCTCCAGAGACCGCGAAAGCAGTTGTCCACCGAGGAATCATAACCGACCTCCAGAACAAGCGTCGAGGGACGGCGTCG ACGCTCACTCGCTCCGAAGTGAGAGGTGGAGGCAAGAAACCCTACCCGCAGAAGAGCACGGGTCGGGCGCGCCGCGGGTCGATGAGGACTCCGCTCCGAC CGGGAGGAGGGGTGATATTCGGGCCTCGGCCCAAGGACTGGTCGATAAAGATAAACAGGAAGGAGAAGCAGCTGGCGATGTCGACGGCGCTGGCGAGCGC GGCGGAGAGCATGATATGCGTGGAGGAGTTCGGGGAGGAGTTCGAGAAGCCGAGGACCAAGGACTTCATCGCGGCGATGGCGAGGTGGGGGCTTGACCCG AAGGAGAAAGTTATGTTTCTGATGATGGATGTGAACGATAATGTAGGGCTCTCGGGGAGGAACATTGGGACGTTGAAAATGCTGACGCCAAGAACGCTGA ATCTGTTTGATATTTTGAATTCGGATAAGCTTGTGTTGACTCCCGATACTGTGGATTTCTTGAACGGGAGGTATGGAGAAGGTGATTATTTTGAGGAAGA GGAAGAGGGAGGTGATGAGTTTGAATTTGAAGGAGAAGATACAGTTGAAGAAGGCTCTGATGACTTGAATAAACTGGCAGCCGCAGCCGCAGGCAGCAGT TACTTCCCATCTGAGATTCCCTGTGCAAGCAAGCAAAACAAACAAGAAAATGCACGCTCCCTACGCAGGCATTATCCTGTTCAGGTTCGAAGGGACTTTC TCAGCCTGACCTGCCCCCGAATTACACTGGCCGCCATGGCCTGGAACCAAGGGCGGGATACAGGCACCCCTGGTGCGTTTCTTCCGTCAATATAG
AA sequence Show only first row Show all	>Lus10040693 pacid=23157660 polypeptide=Lus10040693 locus=Lus10040693.g ID=Lus10040693.BGIv1.0 annot-version=v1.0 MSATVTRPPTAALSSFSSSFFSCSSRIQLKKLIPLCNRRSNSTKFTISCEVATLPIFNFTGEKVGETVLDIKSAPPETAKAVVHRGIITDLQNKRRGTAS TLTRSEVRGGGKKPYPQKSTGRARRGSMRTPLRPGGGVIFGPRPKDWSIKINRKEKQLAMSTALASAAESMICVEEFGEEFEKPRTKDFIAAMARWGLDP KEKVMFLMMDVNDNVGLSGRNIGTLKMLTPRTLNLFDILNSDKLVLTPDTVDFLNGRYGEGDYFEEEEEGGDEFEFEGEDTVEEGSDDLNKLAAAAAGSS YFPSEIPCASKQNKQENARSLRRHYPVQVRRDFLSLTCPRITLAAMAWNQGRDTGTPGAFLPSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07320		EMB2784, RPL4	EMBRYO DEFECTIVE 2784, ribosom...		Lus10040693 [exp]	0	1
AT1G48350		EMB3105	EMBRYO DEFECTIVE 3105, Ribosom...		Lus10038770 [exp]	3.0	0.9728
AT1G48350		EMB3105	EMBRYO DEFECTIVE 3105, Ribosom...		Lus10039092 [exp]	4.0	0.9687
AT1G64510			Translation elongation factor...		Lus10023054 [exp]	4.9	0.9649
AT1G64510			Translation elongation factor...		Lus10032419 [exp]	5.9	0.9625
AT3G60370			FKBP-like peptidyl-prolyl cis-...		Lus10028194 [exp]	6.3	0.9579
AT3G13120			Ribosomal protein S10p/S20e fa...		Lus10016604 [exp]	6.3	0.9641
ATCG00900		ATCG00900.1, RP...	CHLOROPLAST RIBOSOMAL PROTEIN ...		Lus10027894 [exp]	11.0	0.9568
AT1G29070			Ribosomal protein L34 (.1)		Lus10013928 [exp]	11.0	0.9585
AT5G39530			Protein of unknown function (D...		Lus10024051 [exp]	11.5	0.9557
AT1G79850		PDE347, CS17, P...	PLASTID RIBOSOMAL SMALL SUBUNI...		Lus10035863 [exp]	12.3	0.9510

Compare expression of checked genes

Lus10040693 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.