Plant FIBer expression Database

Lus10040694 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G29630 1141 / 0 PY, THIC PYRIMIDINE REQUIRING, thiaminC (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018211
[exp]
1311 / 0 AT2G29630 1144 / 0.0 PYRIMIDINE REQUIRING, thiaminC (.1.2.3)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G249200
[exp]
1177 / 0 AT2G29630 1113 / 0.0 PYRIMIDINE REQUIRING, thiaminC (.1.2.3)
Potri.009G043200
[exp]
1174 / 0 AT2G29630 1115 / 0.0 PYRIMIDINE REQUIRING, thiaminC (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0036 TIM_barrel PF01964 ThiC_Rad_SAM Radical SAM ThiC family
Representative CDS sequence
>Lus10040694 pacid=23157668 polypeptide=Lus10040694 locus=Lus10040694.g ID=Lus10040694.BGIv1.0 annot-version=v1.0
ATGGCGTCAGTGCAAGCTACTACTGCTCTCACTTCCGCTGTATGCAAGAAGGGGAACCATTCTGCTCCCACCAAGTATTCTGGCACTTCGTTTCTGCTTG
GCCGCGTCACTAATTCACCTCGTTCCATCTTCTCTGGTGCTAGAGCGACCTTGACATTTGAACCACCGACTACTACTGATGCTGAGAGAATTAAACAGAG
GAAGCATACCATTGACCCTGCGTCTCCAGATTTTGTGCCTCTCCCATCCTTCGAAGAGTGTTTCCCCAAGAGCACAAAAGAAATCAGGGAAGTTATCCAT
GAAGAGTCTGATCATGTCCTTAAAGTTCCTTTTCGCCGTGTCCACTTGTCAGGGGATGAGCCCAGTTTTGATAACTATGACACTAGTGGTCCTCAGAATA
TTGACCCGCGTTTAGGACTTCCTAAACTCCGGAAAGAATGGATTGACAGGAGGGAGAAGCTTGGTGGACCAAGATTCACGCAGATGTACTATGCAAAGCA
GGGCATTATAACTGAGGAAATGTTATATTGTGCTACTCGCGAAAGGCTTGACCCAGAGTTTGTCAGGTCAGAGGTCGCTAGAGGGCGAGCAATCATCCCT
TCCAACAAAAATCACCTTGAGCTTGAGCCCATGATAGTCGGAAGGAACTTTTTGGTCAAAGTTAATGCAAATATTGGAAACTCAGCTGTTGCAAGCTCTA
TTGAGGAAGAAGTTTACAAAGTTCAATGGGCCACAATGTGGGGTGCTGATACCGTTATGGATCTCTCCACTGGCCGCCATATTCACGAGACCCGGGAATG
GGTTTTGCGCAACTCAGCTGTTCCAGTTGGTACAGTTCCCATCTATCAAGCACTTGAAAAGGTTGATGGGATTGCTGAAAATCTTACCTGGGAGGTCTTC
AGAGACACCCTGATTGAACAAGCTGAGCAGGGTGTAGACTACTTCACAATCCATGCCGGTGTACTCCTGCGATATGTCCCCCTAACAGCAAAGCGCATGA
CTGGAATTGTTTCTCGTGGAGGATCAATTCATGCAAAGTGGTGCTTAGCTCATCACCAGGAAAACTTTGCATATGATCACTGGGATGACATTCTTGATAT
CTGCAATCAGTATGATGTATCTTTGTCGATTGGTGATGGACTTAGACCTGGATCCATATATGATGCCAATGACACTGCTCAATTTGCAGAGCTCTTAACA
CAGGGTGAGCTAACCCGTAGAGCTTGGGAGAAGGATGTTCAGGTAATGAATGAAGGGCCGGGGCATATCCCAATTCACAAGATCCCAGAGAACATGCAGA
AACAGCTAGAATGGTGCAATGAAGCGCCGTTCTACACTCTTGGACCACTGACAACTGACATTGCTCCTGGATATGATCACATCACCTCTGCCATTGGTGC
TGCCAATATTGGAGCTCTGGGAACTGCGCTTCTGTGTTATGTCACCCCAAAGGAGCACCTTGGCCTGCCGAATAGGGATGACGTGAAGACTGGGGTTATT
GCATACAAAATATCCGCTCATGCTGCTGACTTGGCCAAAGGCCATCCTCATGCTCAAGCCTGGGACGATGCATTAAGCAAGGCGAGATTTGAATTCAGAT
GGATGGATCAGTTTGCTTTATCTTTGGACCCCATGACTGCCATGTCCTTCCATGATGAAACACTGCCTTCAGACGGTGCGAAAGTAGCCCACTTTTGTTC
CATGTGCGGGCCTAAGTTCTGCTCCATGAAGATAACAGAGGATGTCCGCAAGTATGCCGAGGAGCATGGCTATGGTAGTGCAGAAGAAGCTGTGCAGCAA
GGTATGGCTGCCATGAGCGCTGAGTTCCTGGCTGCTAAGAAGACCAACAGTGGCGAACAGCATGGTGAGATCGGGGGAGAAATCTACGTTCCCGCCAAGT
AA
AA sequence
>Lus10040694 pacid=23157668 polypeptide=Lus10040694 locus=Lus10040694.g ID=Lus10040694.BGIv1.0 annot-version=v1.0
MASVQATTALTSAVCKKGNHSAPTKYSGTSFLLGRVTNSPRSIFSGARATLTFEPPTTTDAERIKQRKHTIDPASPDFVPLPSFEECFPKSTKEIREVIH
EESDHVLKVPFRRVHLSGDEPSFDNYDTSGPQNIDPRLGLPKLRKEWIDRREKLGGPRFTQMYYAKQGIITEEMLYCATRERLDPEFVRSEVARGRAIIP
SNKNHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWATMWGADTVMDLSTGRHIHETREWVLRNSAVPVGTVPIYQALEKVDGIAENLTWEVF
RDTLIEQAEQGVDYFTIHAGVLLRYVPLTAKRMTGIVSRGGSIHAKWCLAHHQENFAYDHWDDILDICNQYDVSLSIGDGLRPGSIYDANDTAQFAELLT
QGELTRRAWEKDVQVMNEGPGHIPIHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGALGTALLCYVTPKEHLGLPNRDDVKTGVI
AYKISAHAADLAKGHPHAQAWDDALSKARFEFRWMDQFALSLDPMTAMSFHDETLPSDGAKVAHFCSMCGPKFCSMKITEDVRKYAEEHGYGSAEEAVQQ
GMAAMSAEFLAAKKTNSGEQHGEIGGEIYVPAK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G29630 PY, THIC PYRIMIDINE REQUIRING, thiaminC... Lus10040694
[exp]
0 1
AT2G29630 PY, THIC PYRIMIDINE REQUIRING, thiaminC... Lus10018211
[exp]
1.0 0.9315
AT3G54390 Trihelix sequence-specific DNA binding ... Lus10024143
[exp]
2.4 0.9173
AT1G67070 PMI2, DIN9 PHOSPHOMANNOSE ISOMERASE 2, DA... Lus10028480
[exp]
3.2 0.8960
AT5G23980 FRO2, ATFRO4, F... ferric reduction oxidase 4 (.1... Lus10014957
[exp]
10.1 0.9005
Lus10040811
[exp]
11.0 0.8982
AT4G37250 Leucine-rich repeat protein ki... Lus10010263
[exp]
12.5 0.8627
AT3G56960 PIP5K4 phosphatidyl inositol monophos... Lus10003819
[exp]
13.2 0.8482
AT1G52700 alpha/beta-Hydrolases superfam... Lus10014347
[exp]
14.5 0.8673
AT3G23880 F-box and associated interacti... Lus10008870
[exp]
15.0 0.8833
Lus10015565
[exp]
15.0 0.8879

Lus10040694 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.