Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54140 684 / 0 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT5G01180 670 / 0 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT2G02040 601 / 0 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT1G62200 575 / 0 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT2G02020 496 / 6e-172 AtPTR4 peptide transporter 4, Major facilitator superfamily protein (.1.2) AT1G68570 376 / 2e-124 Major facilitator superfamily protein (.1) AT5G46040 376 / 2e-124 Major facilitator superfamily protein (.1) AT2G40460 373 / 2e-123 Major facilitator superfamily protein (.1) AT3G54450 372 / 2e-123 Major facilitator superfamily protein (.1) AT5G19640 372 / 9e-123 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018207 [exp] 961 / 0 AT5G01180 818 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10021132 [exp] 696 / 0 AT3G54140 814 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Lus10035516 [exp] 681 / 0 AT5G01180 913 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10011055 [exp] 605 / 0 AT2G02040 847 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10000670 [exp] 600 / 0 AT2G02040 849 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10030947 [exp] 581 / 0 AT2G02040 884 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10040099 [exp] 576 / 0 AT2G02040 883 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10040100 [exp] 549 / 0 AT2G02040 835 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10024300 [exp] 453 / 2e-154 AT3G54140 532 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G042400 [exp] 794 / 0 AT3G54140 832 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.001G248600 [exp] 793 / 0 AT3G54140 834 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.016G111900 [exp] 715 / 0 AT3G54140 798 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.016G111800 [exp] 670 / 0 AT3G54140 893 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.006G096800 [exp] 669 / 0 AT3G54140 896 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.010G100200 [exp] 590 / 0 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.011G120000 [exp] 539 / 0 AT2G02040 809 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.002G029200 [exp] 457 / 8e-156 AT3G54140 496 / 3e-170 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.005G233500 [exp] 439 / 2e-148 AT3G54140 498 / 6e-171 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.008G170100 [exp] 417 / 4e-140 AT5G46050 816 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10040698 pacid=23157625 polypeptide=Lus10040698 locus=Lus10040698.g ID=Lus10040698.BGIv1.0 annot-version=v1.0 ATGTCAGAGGAGGAATTTCTCACGAAAGATGGGACTCTGGATCATAAAGGGAATCCTGCTGATAAGAGGATTACTGGAACCTGGAAAGCATGTCCCTTTA TCATAGGAAATGAATGCTGCGAGAGATTGGCTTACTATGGCATGAGCTCCAATCTAGTGCTCTACTTCAAGAATCAGCTGAACCAAAGCAGTGCAACTGC TACCAAGAACAACTCTGACTGGAGTGGAACTTGTTACCTCACACCTCTATTGGGAGCCTTTCTTGCTGATGCTTATCTTGGTAGATACTGGACTATTGCT GGCTTCTCAATCATCTATGTCTTTGGAATGACACTTTTAGCAATGTCAGCATCAGTCCCGGGCCTGAAACCAACATGCATATCAAAAGACAACTGCCACG CCACAGAAGGACAGAGCGCGGTTTTCTTCGTAGCTCTCTACATGATAGCTCTAGGGACAGGAGGGATCAAGCCTTGTGTCTCATCCTACGGGGCGGACCA GTTTGATGATGCTGACGTGGAAGAGAAGGAGCACAAGGCCTCTTTCTTCAATTGGTTCTACTTCTCCATCAACGTTGGTGCATTGGTTGCTAGCTCCTTA CTGGTTTGGGTCCAGGAGAATGTGAGCTGGGGATTGGGGTTTGGGATCCCGGCCATAGCCATGGCTATTGCTGTTGCGAGTTTCTTTTCAGGGACCCGCA AGTATAGGTATCAGACGCCTGGTGGTAGCCCTCTTACTAGAATCTGTCAGGTCATTGTGGCTTCCTGCAGAAAGTACAAAGTTAGTCCTCCTAATGACAA GTCGCTTCTTTATGAGAGTGCTGATTCTGAATCCGGCATCACAGGCAGCCGGAAACTCGATCACACCAAAGATTTCAGTTTCCTGGACAAGGCAGCAGTG GAGACAGAGAAAGACCACATAAAGGACACATCAGTAAACCCATGGAGGCTATGCACAGTAACCCAAATCGAGGAATTCAAAGCAATAATCCGCCTGCTCC CGATCTGGGCAACCGGTATAGTCTTCGCAGCAGTATACAGCCAAATGAGCAACCTTTTCGTCCTACAGGGAGACACAATGGACAAGCGAGTAGGAAACTC CAAGTTCAAAATCTCCGCAGCCAACGTATCAGTATTCGACACAATCAGTGTCATATTCTGGGTACCAATCTACGACAGGCTTATAGTCCCAGCCGTCAGA AAAATCACAGGCCACAAGAACGGGTTCACCCAGCTCCAACGAATGGGGATCGGGCTAGTAATTCAGCTCGAGTTCTTCTACGAGCAGGCGCCCGATGCGA TGAGGAGCTTGTGTTCGGCTCTTTCGTTGACTACTGTGGCGTTGGGGAATTACTTGAGCTCGCTGCTGGTGACGATTGTGACGGGTGTTACGACTAAGGG AGGGAAGCCCGGGTGGATTCCTGATAACTTGAACTATGGCCATGTTGATTACTTCTTCTGGCTGCTGGCTGTGCTTAGTGTTGTGAATCTGATGGCGTAT ATGGTGATTGCTAGCTGGTATACTTACAAGAAGCCTGTGGGGACTCTGCGTTGA
AA sequence Show only first row Show all	>Lus10040698 pacid=23157625 polypeptide=Lus10040698 locus=Lus10040698.g ID=Lus10040698.BGIv1.0 annot-version=v1.0 MSEEEFLTKDGTLDHKGNPADKRITGTWKACPFIIGNECCERLAYYGMSSNLVLYFKNQLNQSSATATKNNSDWSGTCYLTPLLGAFLADAYLGRYWTIA GFSIIYVFGMTLLAMSASVPGLKPTCISKDNCHATEGQSAVFFVALYMIALGTGGIKPCVSSYGADQFDDADVEEKEHKASFFNWFYFSINVGALVASSL LVWVQENVSWGLGFGIPAIAMAIAVASFFSGTRKYRYQTPGGSPLTRICQVIVASCRKYKVSPPNDKSLLYESADSESGITGSRKLDHTKDFSFLDKAAV ETEKDHIKDTSVNPWRLCTVTQIEEFKAIIRLLPIWATGIVFAAVYSQMSNLFVLQGDTMDKRVGNSKFKISAANVSVFDTISVIFWVPIYDRLIVPAVR KITGHKNGFTQLQRMGIGLVIQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTGVTTKGGKPGWIPDNLNYGHVDYFFWLLAVLSVVNLMAY MVIASWYTYKKPVGTLR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01180		ATPTR5	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10040698 [exp]	0	1
AT2G03340	WRKY	WRKY3	WRKY DNA-binding protein 3 (.1...		Lus10036800 [exp]	1.0	0.9755
AT2G03340	WRKY	WRKY3	WRKY DNA-binding protein 3 (.1...		Lus10000173 [exp]	2.8	0.9751
AT3G50845			Protein of unknown function (D...		Lus10026019 [exp]	4.2	0.9631
AT5G19140		AtAILP1, AILP1	Aluminium induced protein with...		Lus10034038 [exp]	6.9	0.9681
AT2G18890			Protein kinase superfamily pro...		Lus10025468 [exp]	7.3	0.9595
AT1G06475			unknown protein		Lus10004931 [exp]	13.4	0.9529
AT5G38210			Protein kinase family protein ...		Lus10028495 [exp]	14.6	0.9678
AT4G01250	WRKY	ATWRKY22, WRKY2...	WRKY family transcription fact...		Lus10024676 [exp]	14.8	0.9639
AT4G39830			Cupredoxin superfamily protein...		Lus10016808 [exp]	16.8	0.9428
AT3G52450		PUB22	plant U-box 22 (.1)		Lus10029393 [exp]	17.4	0.9615

Compare expression of checked genes

Lus10040698 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.