Plant FIBer expression Database

Lus10040699 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G58920 261 / 9e-91 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018207
[exp]
331 / 1e-110 AT5G01180 818 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G042300
[exp]
279 / 6e-98 AT5G58920 267 / 5e-93 unknown protein
PFAM info
Representative CDS sequence
>Lus10040699 pacid=23157732 polypeptide=Lus10040699 locus=Lus10040699.g ID=Lus10040699.BGIv1.0 annot-version=v1.0
ATGGTGCGCAAGCGTTACCAAGAAGCCAAGACAGGAATCGAGTATCTAAAATCATTGGATTACGACAAATACCTGAGCAAAGTAGGCGTAGGAAGAAATG
ACTGGTACTTCTGGAAGCAAATCGGGAAAGCACTAGCCTGCACCTACACGATCTTCGGCCTGGGTTGGCTCTACAACGAGACATCCCCACTCGGATGGTG
GACTCTGAAGCCGAGACCGAAAGAGGAGAAAGAGCTGGCTCATCTATACGAGCGGCGGGAGTTTCCCTACCCAGGCGATGCGGAGGCCATGGAAGAGTTC
ATCGCCAAAGGTGGAATGATCGGCACCGCCATCGGCTCAAAGGGTGGGGCGGAGACTGATAATGACGCGGTCAATTTCCAGACGGAGCTGCAGAACAAGA
AGTTCGAACAGGAGGCGCATAAGCTTTGGATCAGGATGCGGAATGAAGTCATCCAGGAGCTTCAAGAGAAAGGGTTCGAGATCGAGTGA
AA sequence
>Lus10040699 pacid=23157732 polypeptide=Lus10040699 locus=Lus10040699.g ID=Lus10040699.BGIv1.0 annot-version=v1.0
MVRKRYQEAKTGIEYLKSLDYDKYLSKVGVGRNDWYFWKQIGKALACTYTIFGLGWLYNETSPLGWWTLKPRPKEEKELAHLYERREFPYPGDAEAMEEF
IAKGGMIGTAIGSKGGAETDNDAVNFQTELQNKKFEQEAHKLWIRMRNEVIQELQEKGFEIE

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G58920 unknown protein Lus10040699
[exp]
0 1
AT3G61113 Ubiquitin related modifier 1 (... Lus10036551
[exp]
1.4 0.8944
AT1G03650 Acyl-CoA N-acyltransferases (N... Lus10025567
[exp]
3.6 0.8271
AT1G12650 unknown protein Lus10020336
[exp]
3.7 0.8268
AT5G62200 Embryo-specific protein 3, (AT... Lus10027387
[exp]
3.7 0.8725
AT5G22875 unknown protein Lus10037369
[exp]
7.4 0.8323
AT1G66240 ATX1, ATATX1 homolog of anti-oxidant 1 (.1.... Lus10028859
[exp]
8.1 0.8630
AT1G55340 Protein of unknown function (D... Lus10013616
[exp]
9.7 0.8489
AT5G53045 unknown protein Lus10017942
[exp]
13.6 0.8484
AT2G02880 mucin-related (.1) Lus10012838
[exp]
15.9 0.8161
AT1G61670 Lung seven transmembrane recep... Lus10025219
[exp]
18.2 0.8263

Lus10040699 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.