Plant FIBer expression Database

Lus10040700 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G58930 150 / 2e-39 Protein of unknown function (DUF740) (.1)
AT2G38070 129 / 1e-31 Protein of unknown function (DUF740) (.1)
AT3G09070 120 / 7e-29 Protein of unknown function (DUF740) (.1)
AT3G46990 119 / 2e-28 Protein of unknown function (DUF740) (.1)
AT5G01170 98 / 2e-21 Protein of unknown function (DUF740) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018206
[exp]
678 / 0 AT5G58930 234 / 6e-70 Protein of unknown function (DUF740) (.1)
Lus10035513
[exp]
124 / 8e-30 AT3G09070 465 / 8e-155 Protein of unknown function (DUF740) (.1)
Lus10027785
[exp]
123 / 1e-29 AT3G09070 385 / 7e-125 Protein of unknown function (DUF740) (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G042200
[exp]
251 / 2e-76 AT5G58930 268 / 5e-83 Protein of unknown function (DUF740) (.1)
Potri.001G248400
[exp]
251 / 3e-76 AT5G58930 287 / 4e-90 Protein of unknown function (DUF740) (.1)
Potri.016G111400
[exp]
165 / 6e-44 AT3G09070 291 / 2e-88 Protein of unknown function (DUF740) (.1)
Potri.006G096600
[exp]
162 / 9e-43 AT3G09070 283 / 3e-85 Protein of unknown function (DUF740) (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05340 DUF740 Protein of unknown function (DUF740)
Representative CDS sequence
>Lus10040700 pacid=23157623 polypeptide=Lus10040700 locus=Lus10040700.g ID=Lus10040700.BGIv1.0 annot-version=v1.0
ATGACTCCTCCTCCGCCACAACCCTCCCACCCCCACTCGCAGCGCCGCCGCTTCCCCTCATGCCACCGTCACCCTACAAAGCCCCTCACCGGATTCTGTG
CATCCTGCCTCCGCGAACGCCTTGCCGGAATCGACCCGGACACCCACCAGGAAACCCCCATCACCCGCTTAGCCCTAGAGCTCCGCCGCTCCAAGTCCTT
CTCCAGCAGCTCCAACCCCAATAACAACAATGCCTCCTCCTCCTCCGCCACCACCCCCACCTCCCCCACCACAAAAACCACTTTCGCGGAGGAAGATGGG
GAGTTGAAGCCGATGACGGAGTTCATAGATCTCGAGTGTCACAAAAAGCCGGGTAAGGATTTCAAAATCGCTGGAAGCTTCTGGGAAGCGGCTTCGGTTT
TCAGCAAGAAATTGGGGAAATGGAATCTGAAGCAGAGGAAGAAGAAAGAAGCGAAACAGCAGCAACAGCCAAACGACGACGGATTATCTGTGGCGATGGA
TGATAATAATAACGACAAGGGGATATTGAAGAAATTGAAGGACACGCTGACGGAAGTTGGCGAATACGGACGGAGGAGATCTTGCGATGCGGATCCACGG
CACTCGATTGACGGCGGCAGATTGTCGATCGATGATTCTCGCCGCTCGTTCGACGAACCGAGAGCTTCCTGGGACGGTTACTTGATTGGGAGAGCTTATC
CAGGGTTTACTCCTTTGGTTTCTGTTGTGGAAGACGATGTGAAGCTAAATAATGATAAGGCAAATAATAAGGAACATCAGATTGGGGATCTGCATAATAA
GGAAGATGGAAGAATCAGCCCAGGAGGAACTGCTCAGACGATGAGCTATTACTCCGATCCGCGGAGGAGGAAGAGCTTCGAGCGATCGGGATCGGTGAAG
GTGATGGAATTAGGGCTGGGAGAAGATGAGTTGAAAGCCATATCGAACGCCAAGGTATCTCCAGAACTTTTCCACGAGGCGAAACTGCTTGTTACCGAGA
AAGAATTGAGGGATTCGAATTGGTACTCCGTTAGAGATTACAATGTGGTAGGCAATGTTAATTCCCTAGACAAAGATGTTGATTCCACTGGTGGGGGGAA
CAACAATGGTAGTAGTGGGGATAGGAAAGGGTCCAAGTCAAAGAAGCTTCCGAAATGGCGAAATGTGTTGAGTATGTTCGGTAAGAAGAGCAGCGAGAGC
AAGTTTGGGGATGGAGAGAGCAGCAGCAGTGGTAGCGTACTTAATCGATCGTTGGCTAGCGAAGAAGGCGAGAAGTTTACGAGGAGCTGTACCATTAGTG
CGAGGAAGTCATGCGATGTGGTCATGGGCAGGAATAATGGCAGTTTTGAGAATAATAAAGATGGCAGCACGCCGCAGAGGAGAGACCAGCTGATGCTGAT
GAGGAATAAGAGCGCTAGGTATTCGCCTAGTCAGAACAATGTGGATAATGGTCTGATGAGATTCTACTTGACACCGCTGAGGACTGACAGTAGAAGCAAA
TCAGGGAAGAGTAGGCTAAAGAACCCTTTGTCCTTGACAAGGAATGTATTGTAA
AA sequence
>Lus10040700 pacid=23157623 polypeptide=Lus10040700 locus=Lus10040700.g ID=Lus10040700.BGIv1.0 annot-version=v1.0
MTPPPPQPSHPHSQRRRFPSCHRHPTKPLTGFCASCLRERLAGIDPDTHQETPITRLALELRRSKSFSSSSNPNNNNASSSSATTPTSPTTKTTFAEEDG
ELKPMTEFIDLECHKKPGKDFKIAGSFWEAASVFSKKLGKWNLKQRKKKEAKQQQQPNDDGLSVAMDDNNNDKGILKKLKDTLTEVGEYGRRRSCDADPR
HSIDGGRLSIDDSRRSFDEPRASWDGYLIGRAYPGFTPLVSVVEDDVKLNNDKANNKEHQIGDLHNKEDGRISPGGTAQTMSYYSDPRRRKSFERSGSVK
VMELGLGEDELKAISNAKVSPELFHEAKLLVTEKELRDSNWYSVRDYNVVGNVNSLDKDVDSTGGGNNNGSSGDRKGSKSKKLPKWRNVLSMFGKKSSES
KFGDGESSSSGSVLNRSLASEEGEKFTRSCTISARKSCDVVMGRNNGSFENNKDGSTPQRRDQLMLMRNKSARYSPSQNNVDNGLMRFYLTPLRTDSRSK
SGKSRLKNPLSLTRNVL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G58930 Protein of unknown function (D... Lus10040700
[exp]
0 1
AT5G03970 F-box associated ubiquitinatio... Lus10042547
[exp]
2.8 0.9130
AT4G24180 ATTLP1 THAUMATIN-LIKE PROTEIN 1 (.1) Lus10034489
[exp]
3.2 0.8981
AT5G19340 unknown protein Lus10041215
[exp]
3.9 0.9331
AT3G54400 Eukaryotic aspartyl protease f... Lus10024148
[exp]
4.0 0.9084
AT2G37020 Translin family protein (.1.2) Lus10029829
[exp]
8.7 0.8845
AT4G20940 Leucine-rich receptor-like pro... Lus10038544
[exp]
10.4 0.9125
AT3G49240 EMB1796 embryo defective 1796, Pentatr... Lus10022406
[exp]
13.4 0.8647
AT5G58480 O-Glycosyl hydrolases family 1... Lus10026387
[exp]
14.4 0.8927
AT1G63160 EMB2811, RFC2 EMBRYO DEFECTIVE 2811, replica... Lus10024504
[exp]
14.5 0.8901
AT3G55280 RPL23A2, RPL23A... RIBOSOMAL PROTEIN L23A2, ribos... Lus10003290
[exp]
16.2 0.8807

Lus10040700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.