Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52390 138 / 2e-41 PAR1 protein (.1) AT3G54040 127 / 2e-37 PAR1 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040714 [exp] 345 / 1e-122 AT5G52390 136 / 2e-40 PAR1 protein (.1) Lus10016450 [exp] 322 / 4e-111 AT5G52390 137 / 6e-39 PAR1 protein (.1) Lus10040715 [exp] 306 / 1e-107 AT5G52390 138 / 4e-41 PAR1 protein (.1) Lus10018204 [exp] 191 / 7e-63 AT5G52390 85 / 2e-21 PAR1 protein (.1) Lus10017196 [exp] 134 / 5e-40 AT3G54040 191 / 1e-62 PAR1 protein (.1) Lus10021114 [exp] 133 / 2e-39 AT3G54040 192 / 6e-63 PAR1 protein (.1) Lus10012788 [exp] 130 / 1e-37 AT5G52390 198 / 7e-64 PAR1 protein (.1) Lus10033988 [exp] 127 / 3e-36 AT5G52390 194 / 3e-62 PAR1 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G039950 [exp] 178 / 3e-57 AT3G54040 140 / 1e-42 PAR1 protein (.1) Potri.009G039900 [exp] 166 / 7e-53 AT3G54040 118 / 4e-34 PAR1 protein (.1) Potri.016G106800 [exp] 162 / 7e-51 AT3G54040 191 / 1e-62 PAR1 protein (.1) Potri.006G094300 [exp] 161 / 9e-51 AT3G54040 198 / 2e-65 PAR1 protein (.1) Potri.009G040000 [exp] 158 / 5e-49 AT5G52390 141 / 3e-42 PAR1 protein (.1) Potri.015G144800 [exp] 148 / 2e-45 AT5G52390 208 / 5e-69 PAR1 protein (.1) Potri.012G141800 [exp] 147 / 7e-45 AT5G52390 213 / 6e-71 PAR1 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06521 [flax] [poplar] PAR1 PAR1 protein
Representative CDS sequence Show only first row Show all	>Lus10040702 pacid=23157801 polypeptide=Lus10040702 locus=Lus10040702.g ID=Lus10040702.BGIv1.0 annot-version=v1.0 ATGACTAGAATGATCACTTTCGTCACTCTATCCTCTCTTCTCCTTCACGGAGTCCTCGGTGATTTGGTATGCGAGGAGCTCCCAGTGGAGAAATGTGCCT ACTCGATCTCCGGATTGGGAAAAAGATGCGTGATGGAGAACTACATATCTAGAAATGGTGTGGTGAAGTACCAATGCGAGACATCGGAGGTAGTTGTGGA CAACATGAAGGACATGATCGAATCGGATGACTGCATCAAGGCATGTGGCCTCGACAGAAACACCGTGGGGATCTCTTCGGATTACCTCCTCACCCGTAAG TTCGTGTCCCAGCTCTGCTCTAGACCCTGCTTCCAGTCCTGCCCCAACATCGTAGACCTCTACTCCAACTTGGCTCAAGCTGAAGGGATGGATCTGTATG GTATGTGCAGCTGGGGTGGTCGTCGTCGGTCGTTGTTACAGCCTAAGAGTTTGAGTGATGCTGGTGCAATTGGATCCCCGATTGGTTCACCTATGTCTTC AGCAGCTGGTCTTGATGATGCTGATGACACTGCTTTTGGTCCCTCTTCTGATGCATACTGA
AA sequence Show only first row Show all	>Lus10040702 pacid=23157801 polypeptide=Lus10040702 locus=Lus10040702.g ID=Lus10040702.BGIv1.0 annot-version=v1.0 MTRMITFVTLSSLLLHGVLGDLVCEELPVEKCAYSISGLGKRCVMENYISRNGVVKYQCETSEVVVDNMKDMIESDDCIKACGLDRNTVGISSDYLLTRK FVSQLCSRPCFQSCPNIVDLYSNLAQAEGMDLYGMCSWGGRRRSLLQPKSLSDAGAIGSPIGSPMSSAAGLDDADDTAFGPSSDAY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52390			PAR1 protein (.1)		Lus10040702 [exp]	0	1
AT4G14805			Bifunctional inhibitor/lipid-t...		Lus10010576 [exp]	3.0	0.7003
AT3G58480			calmodulin-binding family prot...		Lus10029324 [exp]	5.8	0.6548
AT1G18140		LAC1, ATLAC1	laccase 1 (.1)		Lus10009827 [exp]	8.2	0.7626
AT4G38590		BGAL14	beta-galactosidase 14 (.1.2)		Lus10014125 [exp]	10.2	0.6856
AT5G62140			unknown protein		Lus10038887 [exp]	10.2	0.7742
AT5G41610		ATCHX18	cation/H+ exchanger 18, ARABID...		Lus10017541 [exp]	12.5	0.7327
AT1G62340		ALE1	ABNORMAL LEAF-SHAPE 1, ABNORMA...		Lus10015559 [exp]	13.2	0.7492
AT1G07350		SR45a	serine/arginine rich-like prot...		Lus10040705 [exp]	13.4	0.6520
AT4G27570			UDP-Glycosyltransferase superf...		Lus10001858 [exp]	19.0	0.7465
AT1G32560		AtLEA4-1	Late Embryogenesis Abundant 4-...		Lus10040088 [exp]	19.6	0.7376

Compare expression of checked genes

Lus10040702 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.