Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46980 654 / 0 PHT4;3 phosphate transporter 4;3 (.1.2.3) AT2G38060 458 / 4e-157 PHT4;2 phosphate transporter 4;2 (.1) AT4G00370 315 / 3e-101 PHT4;4, ANTR2 anion transporter 2, Major facilitator superfamily protein (.1) AT2G29650 298 / 6e-95 PHT4;1, ANTR1 anion transporter 1, phosphate transporter 4;1 (.1.2.3) AT5G20380 216 / 1e-63 PHT4;5 phosphate transporter 4;5 (.1) AT5G44370 176 / 1e-49 PHT4;6 phosphate transporter 4;6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018203 [exp] 932 / 0 AT3G46980 689 / 0.0 phosphate transporter 4;3 (.1.2.3) Lus10035532 [exp] 449 / 2e-153 AT2G38060 669 / 0.0 phosphate transporter 4;2 (.1) Lus10027761 [exp] 428 / 3e-147 AT2G38060 619 / 0.0 phosphate transporter 4;2 (.1) Lus10018218 [exp] 315 / 5e-101 AT2G29650 761 / 0.0 anion transporter 1, phosphate transporter 4;1 (.1.2.3) Lus10040686 [exp] 318 / 5e-99 AT2G29650 760 / 0.0 anion transporter 1, phosphate transporter 4;1 (.1.2.3) Lus10036366 [exp] 294 / 2e-92 AT4G00370 812 / 0.0 anion transporter 2, Major facilitator superfamily protein (.1) Lus10014769 [exp] 228 / 5e-65 AT4G00370 662 / 0.0 anion transporter 2, Major facilitator superfamily protein (.1) Lus10026551 [exp] 188 / 8e-54 AT5G44370 713 / 0.0 phosphate transporter 4;6 (.1) Lus10013836 [exp] 188 / 9e-54 AT5G44370 714 / 0.0 phosphate transporter 4;6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G248200 [exp] 698 / 0 AT3G46980 675 / 0.0 phosphate transporter 4;3 (.1.2.3) Potri.016G111000 [exp] 462 / 9e-159 AT2G38060 687 / 0.0 phosphate transporter 4;2 (.1) Potri.001G249800 [exp] 313 / 2e-100 AT2G29650 773 / 0.0 anion transporter 1, phosphate transporter 4;1 (.1.2.3) Potri.009G043800 [exp] 312 / 4e-100 AT2G29650 778 / 0.0 anion transporter 1, phosphate transporter 4;1 (.1.2.3) Potri.014G085700 [exp] 304 / 3e-96 AT4G00370 841 / 0.0 anion transporter 2, Major facilitator superfamily protein (.1) Potri.006G062300 [exp] 226 / 7e-67 AT5G20380 636 / 0.0 phosphate transporter 4;5 (.1) Potri.018G121600 [exp] 218 / 5e-64 AT5G20380 654 / 0.0 phosphate transporter 4;5 (.1) Potri.009G168200 [exp] 164 / 6e-45 AT5G44370 676 / 0.0 phosphate transporter 4;6 (.1) Potri.002G160650 [exp] 73 / 9e-15 AT4G00370 190 / 3e-58 anion transporter 2, Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF07690 [flax] [poplar] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Lus10040703 pacid=23157922 polypeptide=Lus10040703 locus=Lus10040703.g ID=Lus10040703.BGIv1.0 annot-version=v1.0 ATGAGCTCTTCCTTCCTCTCGTTCCGTCCACCACTTCCTTCATCTTCTCCTACCGTATCATCACAACACTGTAGAATCCTCAATTCCCAGCGTCTAATTT CCTCTCCACTTGAGAATTTGCCGTCGTGTTCTTCGCCAAGGAGTTCGATTCTACAATTCAAGCTGCAAGGATTGCCCTCCTTACAGCTCCGTTCAGTCTC TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATTGCGACTCAAAGCTTCGAAAGATGGTGCTGATTTCGACTACTTACGGGACGGCACTATCGAGCCGCTA AAGCCGAGTTTCAGAGAGTTCATTACCTCGGAGAGAGTGAAAGTGGTGGCGATGCTTGCCCTGGCACTGGCGCTCTGTAATGCCGATCGAGTGGTGATGT CCGTGGCGATTGTGCCGCTTTCGCTCTCTAACGGATGGAGCCGATCTTTCTCTGGTATCGTTCAGTCGTCGTTTCTGTGGGGATATCTAATTTCGCCAAT ACCTGGTGGGACCTTAGTAGATTACTACGGCGGCAAGGTGGTTATGGGATGGGGTGTAGCTTTGTGGTCATTAGCTACATTTCTCACCCCATGGGCTGCA GAAACCTCTTTATATGCTCTCCTAGCAATGCGTGCTATGCTTGGCATTGCAGAAGGTGTAGCCCTCCCTTGCATGAATAACATGGTAGTAAGATGGTTCC CGCAAACAGAACGATCCAGGGCAGTGGGAATCGCCATGGCTGGATTTCAGCTTGGTTGTGCCATTGGGCTCACACTTTCCCCAATTCTCATGTCCAAAGG GGGTACATTTGGGCCATTTGTTATATTCGGATTATCGGGATTTCTTTGGGCGTTAGTTTGGTATGCTGCAATATCAAGTTCTCCTGTGAGAAGTTCACAG ATATCAAATTTTGAGTTGGAGTACATACAACGAGGAAGCAAGAAGCAGACGTCCTCTCCTGCTAAGGAGCAAACCAAGACGAGCAGGATGCTGCCTCCTT TTGGAAGGTTGCTCTCAAAAATGCCAACGTGGTCATTGATTGTAGCCAATGCCATGCATAGCTGGGGGTTTTTTGTCATTCTTTCTTGGATGCCCATCTA TTTTAATTATATATATCACGTTGATCTCAAACATGCAGCCTGGTTTAGTGCTGTACCCTGGTCTGTGATGGCTTTCATGGGCTACTTTGGGGGCTTGTGG TCGGACGTGTTGATTCGGGCTGGTGTTACTGTTACTTTGACTCGGAAGATTATGCAGTCAATTGGCTTCCTGGGACCAGCGGTTGCTCTTGTTGGGTTAA TGACTGCAAAAAGTCCATCCATTGCTTCTGCTTGGCTAACTTTAGCTGTTGCGCTGAAATCTTTCAGCCACTCTGGCTTTCTTGTGAATCTTCAGGAAAT TGCACCACACTACTCCGGCGTCTTACATGGCATGTCGAACACTGCAGGTACATTAGCAGCCATTTTTGGAACAGTTGGAGCTGGCTATTTTGTGGATCTG ACAGGTTCTTTCAGAGGATTTCTGCTACTGACATCGGCTTTATACTTCCTCTCTGCCGTTTTCTATATCATCTTCTCAACTGGGGAGAGAGTGGATTTTG ATGAGACTGGTTAG
AA sequence Show only first row Show all	>Lus10040703 pacid=23157922 polypeptide=Lus10040703 locus=Lus10040703.g ID=Lus10040703.BGIv1.0 annot-version=v1.0 MSSSFLSFRPPLPSSSPTVSSQHCRILNSQRLISSPLENLPSCSSPRSSILQFKLQGLPSLQLRSVSSSSSSSSSSSLRLKASKDGADFDYLRDGTIEPL KPSFREFITSERVKVVAMLALALALCNADRVVMSVAIVPLSLSNGWSRSFSGIVQSSFLWGYLISPIPGGTLVDYYGGKVVMGWGVALWSLATFLTPWAA ETSLYALLAMRAMLGIAEGVALPCMNNMVVRWFPQTERSRAVGIAMAGFQLGCAIGLTLSPILMSKGGTFGPFVIFGLSGFLWALVWYAAISSSPVRSSQ ISNFELEYIQRGSKKQTSSPAKEQTKTSRMLPPFGRLLSKMPTWSLIVANAMHSWGFFVILSWMPIYFNYIYHVDLKHAAWFSAVPWSVMAFMGYFGGLW SDVLIRAGVTVTLTRKIMQSIGFLGPAVALVGLMTAKSPSIASAWLTLAVALKSFSHSGFLVNLQEIAPHYSGVLHGMSNTAGTLAAIFGTVGAGYFVDL TGSFRGFLLLTSALYFLSAVFYIIFSTGERVDFDETG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G46980		PHT4;3	phosphate transporter 4;3 (.1....		Lus10040703 [exp]	0	1
AT2G27040		OCP11, AGO4	OVEREXPRESSOR OF CATIONIC PERO...		Lus10000295 [exp]	5.2	0.7181
AT1G17210		ATILP1	ARABIDOPSIS IAP-LIKE PROTEIN, ...		Lus10038518 [exp]	17.1	0.7312
AT4G20280		TAF11	TBP-associated factor 11 (.1)		Lus10038380 [exp]	17.2	0.6487
AT5G03415	E2F_DP	ATDPB, DPB	Transcription factor DP (.1.2)		Lus10022620 [exp]	23.2	0.7093
AT1G60990			Glycine cleavage T-protein fam...		Lus10020818 [exp]	32.9	0.6725
AT1G01790		ATKEA1, KEA1	K+ efflux antiporter 1, K+ EFF...		Lus10017823 [exp]	39.2	0.6816
AT4G00630		ATKEA2, KEA2	K+ efflux antiporter 2, K+ eff...		Lus10018844 [exp]	40.8	0.6905
AT2G45150		CDS4	cytidinediphosphate diacylglyc...		Lus10009281 [exp]	65.7	0.6442
AT4G33480			unknown protein		Lus10002086 [exp]	72.1	0.6315
					Lus10040651 [exp]	78.1	0.6147

Compare expression of checked genes

Lus10040703 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.