Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58940 409 / 1e-139 CRCK1 calmodulin-binding receptor-like cytoplasmic kinase 1 (.1) AT4G00330 381 / 1e-129 CRCK2 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) AT2G11520 323 / 6e-106 CRCK3 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) AT1G79620 234 / 4e-68 Leucine-rich repeat protein kinase family protein (.1) AT1G06840 230 / 6e-67 Leucine-rich repeat protein kinase family protein (.1) AT3G59110 218 / 3e-65 Protein kinase superfamily protein (.1) AT1G67720 224 / 8e-65 Leucine-rich repeat protein kinase family protein (.1) AT1G70460 221 / 9e-65 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT5G18500 216 / 1e-64 Protein kinase superfamily protein (.1.2) AT1G23540 221 / 2e-64 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018203 [exp] 719 / 0 AT3G46980 689 / 0.0 phosphate transporter 4;3 (.1.2.3) Lus10018828 [exp] 394 / 2e-134 AT4G00330 471 / 2e-165 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Lus10036376 [exp] 390 / 5e-133 AT4G00330 474 / 1e-166 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Lus10017787 [exp] 394 / 9e-133 AT4G00330 471 / 1e-163 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Lus10014760 [exp] 382 / 3e-122 AT4G00350 703 / 0.0 MATE efflux family protein (.1) Lus10041796 [exp] 323 / 3e-107 AT2G11520 498 / 2e-175 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Lus10028613 [exp] 321 / 2e-104 AT2G11520 540 / 0.0 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Lus10018913 [exp] 306 / 2e-98 AT2G11520 520 / 0.0 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Lus10028347 [exp] 265 / 2e-83 AT2G11520 435 / 3e-149 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G041900 [exp] 505 / 8e-178 AT5G58940 412 / 3e-141 calmodulin-binding receptor-like cytoplasmic kinase 1 (.1) Potri.014G087200 [exp] 416 / 7e-143 AT4G00330 488 / 7e-172 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Potri.002G161600 [exp] 408 / 8e-140 AT4G00330 479 / 2e-168 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Potri.006G064200 [exp] 327 / 4e-107 AT2G11520 508 / 2e-177 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Potri.018G124600 [exp] 317 / 3e-103 AT2G11520 502 / 6e-175 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Potri.004G232500 [exp] 239 / 3e-70 AT5G49760 873 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G213200 [exp] 232 / 4e-68 AT3G46290 808 / 0.0 hercules receptor kinase 1 (.1) Potri.016G144100 [exp] 233 / 1e-67 AT1G79620 1380 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G114400 [exp] 229 / 2e-66 AT1G79620 1295 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G181200 [exp] 228 / 3e-66 AT1G67720 1339 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10040704 pacid=23157656 polypeptide=Lus10040704 locus=Lus10040704.g ID=Lus10040704.BGIv1.0 annot-version=v1.0 ATGAAGAAAAGCAGCTCCAGGAAGAAACGGAATAACTATCATCCTCCTGACAAATTCAAAGCCAAAGATTCTCCTTCTCCGTTGATCAAATTCATGAAAG CTGTAGCTGGAAAGGTAGCTGGAAAGGTAGCTGGGGCCTTCACAATTTTCCGGCGGCGTGATCCTCCCGCCGCCGACGTCAATCTCGCCAGCAAAAGCAT TAGCTCTGCTGCTGAATCGTACTTTTCAAGCGAGTTGTCAAGGGCAAGCAACAGCAGCAAGAGCACGTCGTCGAGGTTGAAGTCTTCGAGCTCCTACGGA TCTTCCACGAGCGGCGGAGTAGTGTTCGGATCGACGCAGCAGGGATACTCGCTTCAAGAGATTGTTAAGGCCACTGATAATTTCTCGTCGGGTAACAAGA TTGGAGAAGGTAGTTTTGGGACTGTGCACAAGGGGAAGTTGAAAGATGGGTCTTTTATTGCGGTGAAGCGTGCCAGAAAGAATTCACATGACAAGCGTTT GGCATTGGAGTTCAGGAACGAGATACTTACTCTGTCTAAGATTGAGCATCTGAATCTGGTGAGATTGTACGGCTATGTCGAGCATCAAGACGAGAGGCTT ATCGTGGTCGAATATGTCAACAATGGGAACCTCAGAGACCATCTTGACAATAGAAGAGGAACTATACTCGAATTCGCGGAACGTTTGGACATCGCCATTG ATGTTGCACACGCAATTACCTATCTTCACATGTACACAGATCGGGCGATAATCCACAGAGACATAAAGGCATCGAACATCCTCCTAAACGACAAGCTCCG AGCCAAAGTTGCAGACTTTGGTTTCGCAAGATTAGCCGCTGAAGATTGCAACGACACCCACATCTCTACTCAGATCAAAGGCACGACTGGTTACTTAGAC CCTGAATACCTCAGGACATACACGCTCACCGAGAAGAGCGATGTCTTCTCTTTTGGTGTCCTACTCGTTGAACTTGTAACCGGAAGGCACCCGATCGACC AGAATCGATCCATCAACGAGAAAGTCACCATCAAATGGGCAATGAAGAGACTCAAAGACGGGGAAGCAATAATGGTGATGGATCCGATTCTGAGAAGGAG CCCCGCTTCGAACAGAGCAACCGAGGATGTTCTGAGACTGGCTCAGAAGTGTCTGGCGCCGATGAGACAGTCGCGACCTTCCATGAAGGAATGTGCAGAG GTTCTGTGGAGAATACGAAAGGAGTTTCGAGAGAAGGGTGCCCTTCAGTCTTCCTCTGCGGCTTCAGCTTCTGCTGATTTTCCCAGGAGGAATCCTAATC AGACCCGAATCACCACATTCGGGTTGGAAGATATTGGCGAGAACCCCAGGTTCGTTTCGGCATGA
AA sequence Show only first row Show all	>Lus10040704 pacid=23157656 polypeptide=Lus10040704 locus=Lus10040704.g ID=Lus10040704.BGIv1.0 annot-version=v1.0 MKKSSSRKKRNNYHPPDKFKAKDSPSPLIKFMKAVAGKVAGKVAGAFTIFRRRDPPAADVNLASKSISSAAESYFSSELSRASNSSKSTSSRLKSSSSYG SSTSGGVVFGSTQQGYSLQEIVKATDNFSSGNKIGEGSFGTVHKGKLKDGSFIAVKRARKNSHDKRLALEFRNEILTLSKIEHLNLVRLYGYVEHQDERL IVVEYVNNGNLRDHLDNRRGTILEFAERLDIAIDVAHAITYLHMYTDRAIIHRDIKASNILLNDKLRAKVADFGFARLAAEDCNDTHISTQIKGTTGYLD PEYLRTYTLTEKSDVFSFGVLLVELVTGRHPIDQNRSINEKVTIKWAMKRLKDGEAIMVMDPILRRSPASNRATEDVLRLAQKCLAPMRQSRPSMKECAE VLWRIRKEFREKGALQSSSAASASADFPRRNPNQTRITTFGLEDIGENPRFVSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58940		CRCK1	calmodulin-binding receptor-li...		Lus10040704 [exp]	0	1
AT5G07360			Amidase family protein (.1.2)		Lus10043019 [exp]	11.2	0.7248
AT5G07580	AP2_ERF		Integrase-type DNA-binding sup...		Lus10004752 [exp]	15.9	0.7279
AT2G02960			RING/FYVE/PHD zinc finger supe...		Lus10012826 [exp]	26.5	0.7040
					Lus10028245 [exp]	32.9	0.7025
AT3G10960		ATAZG1	AZA-guanine resistant1 (.1)		Lus10030548 [exp]	78.1	0.6456
AT5G47910		ATRBOHD, RBOHD	respiratory burst oxidase homo...		Lus10032517 [exp]	108.1	0.6499
AT5G57580			Calmodulin-binding protein (.1...		Lus10011248 [exp]	117.2	0.6519
AT1G30755			Protein of unknown function (D...		Lus10013553 [exp]	122.5	0.6180
AT1G53050			Protein kinase superfamily pro...		Lus10039836 [exp]	142.1	0.6473
AT2G15890		MEE14	maternal effect embryo arrest ...		Lus10027938 [exp]	237.5	0.6172

Compare expression of checked genes

Lus10040704 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.