Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35785 143 / 1e-40 RNA-binding (RRM/RBD/RNP motifs) family protein AT1G07350 138 / 3e-37 SR45a serine/arginine rich-like protein 45a, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G06210 60 / 7e-11 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT1G73530 58 / 6e-10 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G24770 60 / 8e-10 CP31, ATRBP33, ATRBP31, RBP31 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) AT2G27330 56 / 9e-10 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G46020 56 / 1e-09 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G54580 56 / 2e-09 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G52380 58 / 3e-09 CP33, PDE322 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) AT3G52150 56 / 7e-09 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018202 [exp] 197 / 2e-58 AT1G07350 145 / 1e-41 serine/arginine rich-like protein 45a, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10028400 [exp] 142 / 2e-40 AT4G35785 181 / 2e-57 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10041854 [exp] 142 / 6e-40 AT4G35785 179 / 6e-56 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10028776 [exp] 134 / 2e-37 AT4G35785 127 / 5e-36 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10017507 [exp] 119 / 8e-32 AT4G35785 123 / 4e-35 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10018277 [exp] 67 / 9e-12 AT4G19610 770 / 0.0 nucleotide binding;nucleic acid binding;RNA binding (.1) Lus10040636 [exp] 67 / 1e-11 AT4G19610 700 / 0.0 nucleotide binding;nucleic acid binding;RNA binding (.1) Lus10005891 [exp] 63 / 6e-11 AT3G45980 230 / 1e-76 HISTONE H2B, Histone superfamily protein (.1) Lus10040854 [exp] 58 / 1e-10 AT3G46020 112 / 1e-33 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G041700 [exp] 176 / 1e-51 AT4G35785 139 / 6e-39 RNA-binding (RRM/RBD/RNP motifs) family protein Potri.001G248100 [exp] 167 / 1e-48 AT1G07350 125 / 2e-35 serine/arginine rich-like protein 45a, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.003G130301 [exp] 154 / 3e-45 AT4G35785 145 / 3e-43 RNA-binding (RRM/RBD/RNP motifs) family protein Potri.005G105700 [exp] 145 / 3e-41 AT4G35785 158 / 4e-48 RNA-binding (RRM/RBD/RNP motifs) family protein Potri.001G101500 [exp] 97 / 3e-24 AT4G35785 97 / 1e-25 RNA-binding (RRM/RBD/RNP motifs) family protein Potri.011G130300 [exp] 64 / 4e-12 AT5G54580 161 / 2e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G409800 [exp] 62 / 1e-11 AT5G54580 174 / 2e-56 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G340800 [exp] 64 / 2e-11 AT4G24770 322 / 2e-110 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.012G038200 [exp] 62 / 3e-11 AT1G73530 141 / 6e-43 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.006G208500 [exp] 60 / 9e-11 AT5G06210 160 / 1e-51 RNA binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10040705 pacid=23157701 polypeptide=Lus10040705 locus=Lus10040705.g ID=Lus10040705.BGIv1.0 annot-version=v1.0 ATGTCGTATTCGAAGAGATCAAGGTACTCACTGTCGCCTTCACCATACAGGCGACATGGCAGATCGATGTCAAGGTCTTTGTCAAGGTCAAGAAGCCGAT CAAGGAGCCCCTCTGTGGAGAACCCTGGCAACAATCTGTATGTGACAGGGCTGTCGTCTCGCATCACAAAGAGAGACCTCGAGGAGCACTTCTCCAGCGA GGGAAAGGTGACTGGTGTTAGTCTTGTTGTTGATCCATGGACTAGGGAATCTCGTGGATTTGCGTTTGTAACAATGTCCACTATCGATGAAGCTGAGCGT TGCCTTAAGTATTTGGATCGCTCTGTCCTTGAAGGTCGTGTTATAACTGTTGAAAAGGCAAAGAGGCGGAGAGGCAGGACTCCTACTCCTGGAAAGTATC TGGGCCAGCGCACAGCGCGTGTGCGACGAAGAAGCATTAGTGAGTCTTCGAGACGATCCCCGAGTTACTCTCCTTATCTAAGGAGCAGAAGTAGGTCCCG ATCTTATTCATCAGGCCGTAGTAGGAGCAGGTCTTTCTCTCCTCACAGGAGAAGGTCCTCTTCAGGTTATCATTACTGGCGCAGGTCCTACTCTCGATCT TTGTACTATTCCAGGTGCCGAAGGTCCTACTCACGATCGCCGGACTACTACTATGTCCGGAGAAGATCATACTCCAGATCTCCATCCCCTTACAGCAGGT CTCCTGTTTGGAGACGCGAGAGATCGTACTCGCCTTCTGAGTCAGCATACAGCTCACCGGCCGACAGTTATGGAAGAACGCGATACTCTTATCAGTCTGT TTCGCGAAGTCCTTCTCAGTCTCCTCCGAGGAGAAGGAGAAGTTCGAGGAGGAGCTATTCAAGAAGTGTTTCCCCTAGCCCAAGAAGGCGGTCCAGTAGA CGGTATTCTCGCAGCGTCTCTCGTAGCCCGAGAAGGTACCCCAGGAGGAGCTACTCGAGAAGTGTTTCGCTGCCAACGAGGAGCTTGAGGAAGAGGGTGT CATCTTCTAGACACGGCAGTTCTCGACACAGCTATTCGAGGAGTCCTAGCCTGGATGCTAGTTCTAGATCGGTGTCTAGGTCTGTCACCCCAAGGTCTAC TCCTTGA
AA sequence Show only first row Show all	>Lus10040705 pacid=23157701 polypeptide=Lus10040705 locus=Lus10040705.g ID=Lus10040705.BGIv1.0 annot-version=v1.0 MSYSKRSRYSLSPSPYRRHGRSMSRSLSRSRSRSRSPSVENPGNNLYVTGLSSRITKRDLEEHFSSEGKVTGVSLVVDPWTRESRGFAFVTMSTIDEAER CLKYLDRSVLEGRVITVEKAKRRRGRTPTPGKYLGQRTARVRRRSISESSRRSPSYSPYLRSRSRSRSYSSGRSRSRSFSPHRRRSSSGYHYWRRSYSRS LYYSRCRRSYSRSPDYYYVRRRSYSRSPSPYSRSPVWRRERSYSPSESAYSSPADSYGRTRYSYQSVSRSPSQSPPRRRRSSRRSYSRSVSPSPRRRSSR RYSRSVSRSPRRYPRRSYSRSVSLPTRSLRKRVSSSRHGSSRHSYSRSPSLDASSRSVSRSVTPRSTP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07350		SR45a	serine/arginine rich-like prot...		Lus10040705 [exp]	0	1
AT4G08300			nodulin MtN21 /EamA-like trans...		Lus10022187 [exp]	4.4	0.7009
AT1G18390			Protein kinase superfamily pro...		Lus10016737 [exp]	8.6	0.6718
AT3G05640			Protein phosphatase 2C family ...		Lus10016831 [exp]	10.8	0.6537
AT5G52390			PAR1 protein (.1)		Lus10040702 [exp]	13.4	0.6520
AT3G12320			unknown protein		Lus10024129 [exp]	21.9	0.6314
AT1G28520	VOZ	ATVOZ1, VOZ1	vascular plant one zinc finger...		Lus10017700 [exp]	29.0	0.6215
AT5G44960			F-box/RNI-like/FBD-like domain...		Lus10015246 [exp]	36.2	0.6278
					Lus10016931 [exp]	36.9	0.6346
AT5G40390		RS5, SIP1	seed imbibition 1-like, raffin...		Lus10039945 [exp]	44.5	0.6045
					Lus10008904 [exp]	45.6	0.6059

Compare expression of checked genes

Lus10040705 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.