Plant FIBer expression Database

Lus10040706 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G37300 108 / 5e-30 MEE59 maternal effect embryo arrest 59 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018201
[exp]
344 / 1e-122 AT4G37300 105 / 3e-28 maternal effect embryo arrest 59 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G041100
[exp]
160 / 1e-50 AT4G37300 96 / 2e-25 maternal effect embryo arrest 59 (.1)
Potri.007G049800
[exp]
89 / 4e-22 AT4G37300 128 / 8e-38 maternal effect embryo arrest 59 (.1)
PFAM info
Representative CDS sequence
>Lus10040706 pacid=23157788 polypeptide=Lus10040706 locus=Lus10040706.g ID=Lus10040706.BGIv1.0 annot-version=v1.0
ATGGAAAGCATGAGGCCGAATCGGAGCGACGACCATCTGTCGGCAGAGCAGGAGGCGGAGATGGAGCAACAAACCAGAGGCTACTTTGACGACATTGCTC
CTAAGCGCCACACTAAGCCTCAGCGTAGTGACCCTTCTGCAGCTAAATACGTCGACTCTCTCCCCGACGGCGGTGAAGGAGCTATCCCGGAGCTCGTCGA
GTTCCAACGCCTCGAGAGTTCCGACACTCATGAGTCGTACGACGGGAGAAGCGGAGAAGCGACGATGAGGGAGGAGTTTGTGGAGACTGACTACTATAAG
GATCTCAACTGCGTTGACAAGCAACATCACACGACGGGAACTGGGTTCATCAAGATGGAAAGTGATGCTGATGGGAAGTCCTTCCACCTAGAGCCTGACG
AGCCAGAGAAGGTCAGCAGCCATGAATCAGGCAGGGGAAACCCTGCTACCAATGAATGGATCCCTGATGCTGCTGATAATGTAAACCCAGTAGAAGCGAC
AATTGAGGACAAAAACTCTGGCTCCGGCCACAGCCGTTGA
AA sequence
>Lus10040706 pacid=23157788 polypeptide=Lus10040706 locus=Lus10040706.g ID=Lus10040706.BGIv1.0 annot-version=v1.0
MESMRPNRSDDHLSAEQEAEMEQQTRGYFDDIAPKRHTKPQRSDPSAAKYVDSLPDGGEGAIPELVEFQRLESSDTHESYDGRSGEATMREEFVETDYYK
DLNCVDKQHHTTGTGFIKMESDADGKSFHLEPDEPEKVSSHESGRGNPATNEWIPDAADNVNPVEATIEDKNSGSGHSR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G37300 MEE59 maternal effect embryo arrest ... Lus10040706
[exp]
0 1
AT4G37300 MEE59 maternal effect embryo arrest ... Lus10018201
[exp]
1.0 0.8941
AT4G15545 unknown protein Lus10012775
[exp]
7.1 0.8113
AT5G48250 CO COL10 B-box type zinc finger protein... Lus10041096
[exp]
9.4 0.8220
AT3G10060 FKBP-like peptidyl-prolyl cis-... Lus10035560
[exp]
9.6 0.8400
AT2G37195 unknown protein Lus10002229
[exp]
13.6 0.7923
AT2G33500 CO COL14 B-box type zinc finger protein... Lus10041526
[exp]
13.8 0.7910
AT3G51430 SSL5, YLS2 YELLOW-LEAF-SPECIFIC GENE 2, S... Lus10028376
[exp]
14.3 0.7932
AT4G15560 AtCLA1, DXS, DX... 1-DEOXY-D-XYLULOSE 5-PHOSPHATE... Lus10033987
[exp]
14.8 0.8269
AT4G15545 unknown protein Lus10034001
[exp]
15.0 0.8131
AT2G22420 Peroxidase superfamily protein... Lus10035925
[exp]
15.9 0.7928

Lus10040706 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.