Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58960 207 / 2e-61 GIL1 GRAVITROPIC IN THE LIGHT, Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) AT4G34080 67 / 3e-12 Plant protein of unknown function (DUF641) (.1) AT2G45260 67 / 7e-12 Plant protein of unknown function (DUF641) (.1) AT4G36100 61 / 3e-10 Sec1/munc18-like (SM) proteins superfamily (.1) AT4G33320 59 / 2e-09 Plant protein of unknown function (DUF641) (.1) AT2G30380 49 / 3e-06 Plant protein of unknown function (DUF641) (.1) AT1G29300 48 / 8e-06 UNE1 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016444 [exp] 429 / 4e-147 AT5G58960 635 / 0.0 GRAVITROPIC IN THE LIGHT, Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) Lus10030291 [exp] 77 / 3e-15 AT2G45260 668 / 0.0 Plant protein of unknown function (DUF641) (.1) Lus10001989 [exp] 75 / 2e-14 AT2G45260 671 / 0.0 Plant protein of unknown function (DUF641) (.1) Lus10008587 [exp] 53 / 2e-07 AT2G45260 266 / 1e-84 Plant protein of unknown function (DUF641) (.1) Lus10009923 [exp] 52 / 5e-07 AT2G45260 275 / 2e-88 Plant protein of unknown function (DUF641) (.1) Lus10024190 [exp] 52 / 6e-07 AT2G45260 270 / 1e-86 Plant protein of unknown function (DUF641) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G041000 [exp] 249 / 8e-77 AT5G58960 466 / 2e-159 GRAVITROPIC IN THE LIGHT, Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) Potri.002G145900 [exp] 72 / 8e-14 AT2G45260 692 / 0.0 Plant protein of unknown function (DUF641) (.1) Potri.013G155400 [exp] 64 / 6e-11 AT2G45260 300 / 4e-98 Plant protein of unknown function (DUF641) (.1) Potri.014G067600 [exp] 61 / 4e-10 AT2G45260 462 / 3e-163 Plant protein of unknown function (DUF641) (.1) Potri.019G128300 [exp] 48 / 8e-06 AT2G45260 241 / 2e-75 Plant protein of unknown function (DUF641) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04859 [flax] [poplar] DUF641 Plant protein of unknown function (DUF641)
Representative CDS sequence Show only first row Show all	>Lus10040707 pacid=23157891 polypeptide=Lus10040707 locus=Lus10040707.g ID=Lus10040707.BGIv1.0 annot-version=v1.0 ATGTTTCCTGGGATCTTCCTCTGTTCCCTCAGCTCAGACTCTAAAAGGAAAAGAGAAGACGTCAAGGTAACGAACAAGAAGCGAGAAATGGCTACCAAGG TGTCTAATTTCTCCGACCTGATTCAACGAGTTGCCGCTTCTTGCTTGCTCCACCCTCTCGCCGGCGTTAAGCATGATCAGTCAGTGACTAACGGATCCGG CAGCGAGGAAGAGGATGTTTACCAGTATGAAACAGATGACGACGAAGAAGAAGAGGAAGAAACTGAGGAAGAGGAGACGGATGGGGAGGAAGTAGAGGAA CTGAAGAACGGGGAAATTAGGGCTTGGAAACAGGGGAGGAAGGAGAACCAGCAGCGGAGCGAGTCGGATATGGTTCCGATTGATCGAGTAATGGAAGTGG AGATGCTGGTCAACGAGGTATTTGACTGCGTTTCGGCGATGAAGAGGGCGTACGTCACCTTGCAAGAGGCGCATTGCCCGTGGGATCCGGATCGGATGCA GGTCGCTGACGTGGCGGTGGTCGGCGAGCTGAGGAATTTGGGGGTTTTGAGGGAGAGGTTTAGGAGGTGCGTCAAAGTTAGTGGGGGAGGAGGAAGGAGG AAGAGAGGCGGCGGATGCGGAGTTGGGATGCTGAGAGAGGCAGTGGCGCCGTATGAGGCAGCGGTGGATGAGCTGAAGAAGGAAGTGAAGGCGAAGCAGG CGGAGGTTGAGAATCTGAAGGAGAAGCTGAAGGCCGCCACGTGTACCGGCAAAGGAGGGAAGAAGAAAGGGTGGTCGTCGCAGTCCAAGCGCAAAGTCAG CTGTAGTCACGGCTCCCAAGTGGCGATGTCTCCGGCGCCGGAGCTGTTCGAGGGAACGATGAGTCAGGTGAAGGAGACGTCCAAGGCATTCACATCCATC CTCCTATCGCTGATGCGAGCAGCGCAGTGGGACATCCCGGCGGCCGTCCGATCAATCGAGGCCGGCGCCCCCGCGAGGAAAAACGACAGGAAAATGAATA CAATCAAAGACAACGACTCCCCCGATCAATACGATCGCCTCCACGGCGGCGACGCACCACGCGAAGTACGCGCTGGAATCGTACATCTCCCGGAAAATCT TCCAAGGATTCGACCACGAGACGTTCTACATGGACGGGAGCCTCTCGTCGCTGATCAACCCTGA
AA sequence Show only first row Show all	>Lus10040707 pacid=23157891 polypeptide=Lus10040707 locus=Lus10040707.g ID=Lus10040707.BGIv1.0 annot-version=v1.0 MFPGIFLCSLSSDSKRKREDVKVTNKKREMATKVSNFSDLIQRVAASCLLHPLAGVKHDQSVTNGSGSEEEDVYQYETDDDEEEEEETEEEETDGEEVEE LKNGEIRAWKQGRKENQQRSESDMVPIDRVMEVEMLVNEVFDCVSAMKRAYVTLQEAHCPWDPDRMQVADVAVVGELRNLGVLRERFRRCVKVSGGGGRR KRGGGCGVGMLREAVAPYEAAVDELKKEVKAKQAEVENLKEKLKAATCTGKGGKKKGWSSQSKRKVSCSHGSQVAMSPAPELFEGTMSQVKETSKAFTSI LLSLMRAAQWDIPAAVRSIEAGAPARKNDRKMNTIKDNDSPDQYDRLHGGDAPREVRAGIVHLPENLPRIRPRDVLHGREPLVADQP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58960		GIL1	GRAVITROPIC IN THE LIGHT, Plan...		Lus10040707 [exp]	0	1
AT5G58960		GIL1	GRAVITROPIC IN THE LIGHT, Plan...		Lus10040708 [exp]	1.4	0.8812
AT5G58960		GIL1	GRAVITROPIC IN THE LIGHT, Plan...		Lus10016444 [exp]	2.0	0.9023
AT5G02750		SGR9	SHOOT GRAVITROPISM 9, RING/U-b...		Lus10015046 [exp]	4.6	0.8569
					Lus10014941 [exp]	6.3	0.8011
AT3G57670	C2H2ZnF	WIP2, NTT	WIP domain protein 2, NO TRANS...		Lus10031271 [exp]	13.0	0.8327
AT1G22710		SUT1, ATSUC2, S...	SUCROSE TRANSPORTER 1, ARABIDO...		Lus10007702 [exp]	13.7	0.8569
					Lus10018215 [exp]	16.8	0.8266
AT4G33840			Glycosyl hydrolase family 10 p...		Lus10014642 [exp]	17.9	0.8171
AT4G14030		SBP1	selenium-binding protein 1 (.1...		Lus10035760 [exp]	19.8	0.7718
AT5G24090		ATCHIA	chitinase A (.1)		Lus10010137 [exp]	20.0	0.8163

Compare expression of checked genes

Lus10040707 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.