Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58970 427 / 1e-151 ATUCP2 uncoupling protein 2 (.1.2) AT3G54110 374 / 1e-130 ATUCP1, UCP1, UCP2, UCP, ATPUMP1 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) AT2G22500 176 / 4e-53 UCP5, ATPUMP5, DIC1 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) AT1G14140 169 / 2e-50 Mitochondrial substrate carrier family protein (.1) AT4G24570 169 / 2e-50 DIC2 dicarboxylate carrier 2 (.1) AT5G09470 141 / 2e-39 DIC3 dicarboxylate carrier 3 (.1) AT4G03115 134 / 8e-37 Mitochondrial substrate carrier family protein (.1) AT5G19760 121 / 3e-32 Mitochondrial substrate carrier family protein (.1) AT3G21390 86 / 8e-19 Mitochondrial substrate carrier family protein (.1) AT5G46800 83 / 3e-18 BOU A BOUT DE SOUFFLE, Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016445 [exp] 509 / 0 AT5G58970 493 / 1e-177 uncoupling protein 2 (.1.2) Lus10027755 [exp] 382 / 5e-134 AT3G54110 515 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Lus10021123 [exp] 380 / 3e-133 AT3G54110 521 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Lus10035538 [exp] 380 / 4e-133 AT3G54110 512 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Lus10017187 [exp] 360 / 2e-125 AT3G54110 501 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Lus10030443 [exp] 164 / 9e-49 AT1G14140 421 / 3e-149 Mitochondrial substrate carrier family protein (.1) Lus10007883 [exp] 131 / 6e-35 AT5G19760 536 / 0.0 Mitochondrial substrate carrier family protein (.1) Lus10024769 [exp] 128 / 1e-34 AT4G03115 401 / 3e-141 Mitochondrial substrate carrier family protein (.1) Lus10030361 [exp] 124 / 2e-33 AT5G19760 489 / 9e-177 Mitochondrial substrate carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G247800 [exp] 447 / 1e-159 AT5G58970 456 / 3e-163 uncoupling protein 2 (.1.2) Potri.006G095500 [exp] 406 / 2e-143 AT3G54110 513 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Potri.016G110100 [exp] 402 / 9e-142 AT3G54110 483 / 5e-174 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Potri.017G045100 [exp] 172 / 2e-51 AT2G22500 451 / 6e-161 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.017G045150 [exp] 172 / 2e-51 AT2G22500 457 / 3e-163 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.017G047800 [exp] 169 / 2e-50 AT4G24570 435 / 2e-154 dicarboxylate carrier 2 (.1) Potri.007G113000 [exp] 167 / 2e-49 AT4G24570 404 / 4e-142 dicarboxylate carrier 2 (.1) Potri.005G157300 [exp] 166 / 4e-49 AT2G22500 412 / 2e-145 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.002G104400 [exp] 163 / 5e-48 AT2G22500 427 / 1e-151 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.010G165900 [exp] 156 / 2e-45 AT1G14140 447 / 1e-159 Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10040709 pacid=23157739 polypeptide=Lus10040709 locus=Lus10040709.g ID=Lus10040709.BGIv1.0 annot-version=v1.0 ATGGCAGATCTCCACCCCAAATCCGACATTTCATTCGCTGAGGTCTTCCTCTGTAGCGCATTTGCTGCTTGTTTCGCCGAGTTCTGTACGATTTCATTAG ACACTGCTAAAGTGAGGCTTCAGCTCCAGCGCAAGGCAACCCCTGGGGATGGAGCAGGTGTACCAAAGTACAGAGGTTTGTTGGGCACCATGGTCACAAT TGCCAAGGAGGAAGGTTTATCAGCACTTTGGAAAGGTGTTACTGCTGGATTGCATCGCCAGTTCATTTACGGTGGCTTGAGGATCGGATTGTACGAACCG GTGAAATCACTTCTGGTTGGAAGTGATTCTGGTGGAGTTATCCCTTTATACCAGAAGATCCTTGCAGCTCTGATAACTGGTGCAATAGCTATAATTGTAG CCAATCCTACTGACCTTGTAAAAGTCAGACTGCAAGCTGAAGGGAAATTACCACCTGGTGTACCTAAGCGATACGCTGGAGCTTTCGATGCTTATCTTAC TATAGTGAAGCAGGAGGGACTAGCTGCATTGTGGACTGGACTTGGGCCAAACATAGCTAGAAATGCTATCATAAATGCTGCTGAGCTTGCCAGTTACGAT GAAATAAAGCAGACAATTTTGCAAATTCCAGGGTTCAGGGATAATGTTTTGACTCACATTCTAGCCGGCCTTGGTGCTGGTTTCTTTGCTGTGAGCATTG GTTCACCCATTGATGTGGTGAAATCAAGAATGATGGGAGATTCTTCCTACAAAAGCACTGTAGACTGTTTCGTTAAGACTATGAAGAATGAGGGCATTTT CGCCTTCTACAAAGGATTCCTTCCCAATTTCGGTCGGCTTGGATCCTGGAATGTTATAATGTTCTTGACACTAGAGCAAGTGAAGAAACTATTCGTCAGA GAAGTATACTACGATTGA
AA sequence Show only first row Show all	>Lus10040709 pacid=23157739 polypeptide=Lus10040709 locus=Lus10040709.g ID=Lus10040709.BGIv1.0 annot-version=v1.0 MADLHPKSDISFAEVFLCSAFAACFAEFCTISLDTAKVRLQLQRKATPGDGAGVPKYRGLLGTMVTIAKEEGLSALWKGVTAGLHRQFIYGGLRIGLYEP VKSLLVGSDSGGVIPLYQKILAALITGAIAIIVANPTDLVKVRLQAEGKLPPGVPKRYAGAFDAYLTIVKQEGLAALWTGLGPNIARNAIINAAELASYD EIKQTILQIPGFRDNVLTHILAGLGAGFFAVSIGSPIDVVKSRMMGDSSYKSTVDCFVKTMKNEGIFAFYKGFLPNFGRLGSWNVIMFLTLEQVKKLFVR EVYYD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58970		ATUCP2	uncoupling protein 2 (.1.2)		Lus10040709 [exp]	0	1
AT5G66420			unknown protein		Lus10025992 [exp]	1.4	0.8932
AT5G58970		ATUCP2	uncoupling protein 2 (.1.2)		Lus10016445 [exp]	3.7	0.8850
AT3G62110			Pectin lyase-like superfamily ...		Lus10009972 [exp]	4.2	0.8913
AT1G13860		QUL1	QUASIMODO2 LIKE 1 (.1.2.3.4)		Lus10036883 [exp]	4.2	0.9161
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Lus10005560 [exp]	6.0	0.8912
AT4G35300		TMT2	tonoplast monosaccharide trans...		Lus10030726 [exp]	6.9	0.8831
AT5G47900			Protein of unknown function (D...		Lus10014112 [exp]	7.7	0.8793
AT1G19835			Plant protein of unknown funct...		Lus10024325 [exp]	13.0	0.8894
AT1G64650			Major facilitator superfamily ...		Lus10000337 [exp]	13.9	0.8888
					Lus10037878 [exp]	14.5	0.8517

Compare expression of checked genes

Lus10040709 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.