Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52370 155 / 4e-49 unknown protein AT5G58990 148 / 2e-46 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016449 [exp] 234 / 4e-80 AT5G52370 169 / 2e-54 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G040100 [exp] 167 / 1e-53 AT5G52370 150 / 4e-47 unknown protein Potri.001G246800 [exp] 162 / 1e-51 AT5G52370 160 / 2e-51 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040713 pacid=23157590 polypeptide=Lus10040713 locus=Lus10040713.g ID=Lus10040713.BGIv1.0 annot-version=v1.0 ATGGCGACTAGTTTGGCGAACAGAGCATCCTCCAGTAATCAAGCCATATGTTTCTTCCGCGGCGCTTTCAATTCACTCAAAAACTTCAGTACTGCTTCCA CTCCTGCTCCAGCTCAAGCCCCAACTGCCGACTCCCCTGCCAAAAAATCGAAGCGGCGGAAGAGGAAGAACCTCTTCGAGGTTGCTCAGTTCTTGCCCAA ATGGGGACTCGGGTACCACTTGGCCAAATCTCACTGGTCCAATGTCTCCTACGAGATCACCAAGATCAATCTTTACAAGGATGGCAGACACGGGAAGGCA TGGGGGCTTGCTTACAAAGATGGATTGCCTGCAGCAGATGCTCCCAAGAAGATCAGTGGAGTTCATAAGCGTTGCTGGAGATATCTACCAGGCTTAGAAA AATCAAATCAGAACTTGCTAAAGCCCTCAAGTCCAACAGAGACTCCCCCTAAGGCTGAAGAAGTTCAAGCTGCGTGA
AA sequence Show only first row Show all	>Lus10040713 pacid=23157590 polypeptide=Lus10040713 locus=Lus10040713.g ID=Lus10040713.BGIv1.0 annot-version=v1.0 MATSLANRASSSNQAICFFRGAFNSLKNFSTASTPAPAQAPTADSPAKKSKRRKRKNLFEVAQFLPKWGLGYHLAKSHWSNVSYEITKINLYKDGRHGKA WGLAYKDGLPAADAPKKISGVHKRCWRYLPGLEKSNQNLLKPSSPTETPPKAEEVQAA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52370			unknown protein		Lus10040713 [exp]	0	1
AT3G49910			Translation protein SH3-like f...		Lus10018139 [exp]	2.6	0.9636
AT4G29830		VIP3	vernalization independence 3, ...		Lus10017159 [exp]	4.0	0.9602
AT3G21350		MED6	RNA polymerase transcriptional...		Lus10022814 [exp]	4.6	0.9439
AT3G04770		RPSAB	40s ribosomal protein SA B (.1...		Lus10037445 [exp]	6.0	0.9584
AT4G02730		AtWDR5b	human WDR5 \(WD40 repeat\) hom...		Lus10006916 [exp]	6.2	0.9322
AT2G47110		UBQ6	ubiquitin 6 (.1.2)		Lus10030595 [exp]	6.9	0.9528
AT1G80040			unknown protein		Lus10014293 [exp]	10.3	0.8895
AT5G43970		ATTOM22-V, TOM2...	TRANSLOCASE OUTER MITOCHONDRIA...		Lus10024950 [exp]	12.2	0.9293
AT1G24265			Protein of unknown function (D...		Lus10011347 [exp]	12.5	0.9132
AT2G35390			Phosphoribosyltransferase fami...		Lus10040098 [exp]	12.6	0.8734

Compare expression of checked genes

Lus10040713 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.