Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52390 136 / 2e-40 PAR1 protein (.1) AT3G54040 129 / 9e-38 PAR1 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040702 [exp] 330 / 8e-117 AT5G52390 138 / 2e-41 PAR1 protein (.1) Lus10016450 [exp] 325 / 3e-112 AT5G52390 137 / 6e-39 PAR1 protein (.1) Lus10040715 [exp] 300 / 1e-104 AT5G52390 138 / 4e-41 PAR1 protein (.1) Lus10018204 [exp] 185 / 3e-60 AT5G52390 85 / 2e-21 PAR1 protein (.1) Lus10017196 [exp] 137 / 1e-40 AT3G54040 191 / 1e-62 PAR1 protein (.1) Lus10021114 [exp] 135 / 3e-40 AT3G54040 192 / 6e-63 PAR1 protein (.1) Lus10012788 [exp] 135 / 3e-39 AT5G52390 198 / 7e-64 PAR1 protein (.1) Lus10033988 [exp] 130 / 4e-37 AT5G52390 194 / 3e-62 PAR1 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G039950 [exp] 181 / 3e-58 AT3G54040 140 / 1e-42 PAR1 protein (.1) Potri.009G039900 [exp] 170 / 5e-54 AT3G54040 118 / 4e-34 PAR1 protein (.1) Potri.016G106800 [exp] 165 / 8e-52 AT3G54040 191 / 1e-62 PAR1 protein (.1) Potri.006G094300 [exp] 163 / 4e-51 AT3G54040 198 / 2e-65 PAR1 protein (.1) Potri.009G040000 [exp] 162 / 3e-50 AT5G52390 141 / 3e-42 PAR1 protein (.1) Potri.015G144800 [exp] 153 / 6e-47 AT5G52390 208 / 5e-69 PAR1 protein (.1) Potri.012G141800 [exp] 147 / 6e-45 AT5G52390 213 / 6e-71 PAR1 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06521 [flax] [poplar] PAR1 PAR1 protein
Representative CDS sequence Show only first row Show all	>Lus10040714 pacid=23157866 polypeptide=Lus10040714 locus=Lus10040714.g ID=Lus10040714.BGIv1.0 annot-version=v1.0 ATGGCTACTTGTGTCTTCGTTAACATGATCACTTTTGTCACTCTATCGTCTCTTCTCCTTCATGGAGTCCTCGGTGATCTTGTTTGCGAGGAGCTCCCGG TGGAGAAGTGCGCATACTCGATCTCCGGATCAGGGAAGAGATGCGTGATGGAGAACTACATATCTAGAAATGGTGTCGTGAAGTACCAATGCGAGACATC GGAGGTAGTGGTGGACAACATGAAGGACATGATCGAGTCGGATGAATGCATCAAGGCATGTGGCATCGACCGAAACACCGTGGGGATCTCCTCGGATTAC CTCCTCACACGTAAGTTCGTGTCACAGCTCTGCTCCAGGCCCTGCTTCCAGTCCTGCCCCAACATCGTCGATCTCTACTCCAACTTGGCTCTAGCTGAAG GGATGGATTTGTATGGTATGTGCAGCTGGGGTGGTCGTCGTAGGTCATTGTTGCAGCCTAAGAGTTCGAGTGATGCTGGTGCAGTTGGAAGCTCGATTGG TTCACCTATGCCTTTAGCAGCTGGTCTTGCTGATACTGATGATGATGCCACGGCTTTTGGTCCCTCTTCTGATGCCAGTACTGCTTTTGGTCCCTCTTCT GATGCATACTGA
AA sequence Show only first row Show all	>Lus10040714 pacid=23157866 polypeptide=Lus10040714 locus=Lus10040714.g ID=Lus10040714.BGIv1.0 annot-version=v1.0 MATCVFVNMITFVTLSSLLLHGVLGDLVCEELPVEKCAYSISGSGKRCVMENYISRNGVVKYQCETSEVVVDNMKDMIESDECIKACGIDRNTVGISSDY LLTRKFVSQLCSRPCFQSCPNIVDLYSNLALAEGMDLYGMCSWGGRRRSLLQPKSSSDAGAVGSSIGSPMPLAAGLADTDDDATAFGPSSDASTAFGPSS DAY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52390			PAR1 protein (.1)		Lus10040714 [exp]	0	1
					Lus10018591 [exp]	1.0	0.8359
AT2G31180	MYB	ATMYB14, Myb14a...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10022021 [exp]	7.3	0.8282
AT2G34930			disease resistance family prot...		Lus10000220 [exp]	8.5	0.6177
AT4G29340		PRF4	profilin 4 (.1)		Lus10012935 [exp]	9.0	0.8282
					Lus10022865 [exp]	10.1	0.7415
AT3G02100			UDP-Glycosyltransferase superf...		Lus10003456 [exp]	10.4	0.8282
AT2G04810			Protein of unknown function (D...		Lus10020538 [exp]	11.2	0.8267
AT2G27410	B3		Domain of unknown function (DU...		Lus10038980 [exp]	11.5	0.7764
AT3G44220			Late embryogenesis abundant (L...		Lus10005214 [exp]	11.5	0.8238
AT3G62710			Glycosyl hydrolase family prot...		Lus10034128 [exp]	12.6	0.6893

Compare expression of checked genes

Lus10040714 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.