Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52390 130 / 7e-38 PAR1 protein (.1) AT3G54040 119 / 8e-34 PAR1 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016450 [exp] 281 / 5e-95 AT5G52390 137 / 6e-39 PAR1 protein (.1) Lus10040714 [exp] 273 / 6e-94 AT5G52390 136 / 2e-40 PAR1 protein (.1) Lus10040702 [exp] 266 / 1e-91 AT5G52390 138 / 2e-41 PAR1 protein (.1) Lus10018204 [exp] 159 / 5e-50 AT5G52390 85 / 2e-21 PAR1 protein (.1) Lus10017196 [exp] 133 / 2e-39 AT3G54040 191 / 1e-62 PAR1 protein (.1) Lus10021114 [exp] 132 / 9e-39 AT3G54040 192 / 6e-63 PAR1 protein (.1) Lus10012788 [exp] 131 / 9e-38 AT5G52390 198 / 7e-64 PAR1 protein (.1) Lus10033988 [exp] 128 / 4e-36 AT5G52390 194 / 3e-62 PAR1 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G039950 [exp] 159 / 2e-49 AT3G54040 140 / 1e-42 PAR1 protein (.1) Potri.009G040000 [exp] 156 / 6e-48 AT5G52390 141 / 3e-42 PAR1 protein (.1) Potri.016G106800 [exp] 153 / 4e-47 AT3G54040 191 / 1e-62 PAR1 protein (.1) Potri.006G094300 [exp] 151 / 2e-46 AT3G54040 198 / 2e-65 PAR1 protein (.1) Potri.009G039900 [exp] 145 / 3e-44 AT3G54040 118 / 4e-34 PAR1 protein (.1) Potri.015G144800 [exp] 139 / 1e-41 AT5G52390 208 / 5e-69 PAR1 protein (.1) Potri.012G141800 [exp] 135 / 4e-40 AT5G52390 213 / 6e-71 PAR1 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06521 [flax] [poplar] PAR1 PAR1 protein
Representative CDS sequence Show only first row Show all	>Lus10040715 pacid=23157783 polypeptide=Lus10040715 locus=Lus10040715.g ID=Lus10040715.BGIv1.0 annot-version=v1.0 ATGACTACTCATGTCTTCACTAGAATGATCACTTTCCTTGCTCTATCGTCTCTTCTCCTTCATGGAGTCCTCAGTGATCTGGTATGCGAGGAGCTCCCAT TGGAGAACTGCTCCTACTCGATCTCCGGATCGGGAAAAAGATGCGTGATGGAGAACTACATATCTAGAAGTGGTGTCGTGAAGTACCAATGCGAGACATC AGAGGTAGTGGTGGACAACATGAAGAACATGGTTGAGTCAGATGAATGCATCAAGGCATGTGGGGTCGACAGAAACACCGTAGGGATCTCTTCGGATTAC CTCCTCACCCGTAAGTTCGTGTCACATCTCTGCTCTGGACCCTGCTTCCAGTCCTGCCCCAACATCGTCGACCTCTACTCCAACTTGGCTCTAGCAGAAG GGATGGATTTGTATGGTATGTGCAGCTTGGCTGGTCGACGTAGGTCGTTGTTCCAGCCTAAAAGTTCAAGTGATGCTCGTACTGCAGCAGCAGCAGCAGC AAATGGAGTCCCAATCGGTGCCCCGATTGGTTCTCCTATGTCTTCAGCAGCTGGTCTGGCTTCTTCGGATGACGATGTTGATGATGCCGATGCTGCTTTC GGTCCCTCTTCTGATGCATACTGA
AA sequence Show only first row Show all	>Lus10040715 pacid=23157783 polypeptide=Lus10040715 locus=Lus10040715.g ID=Lus10040715.BGIv1.0 annot-version=v1.0 MTTHVFTRMITFLALSSLLLHGVLSDLVCEELPLENCSYSISGSGKRCVMENYISRSGVVKYQCETSEVVVDNMKNMVESDECIKACGVDRNTVGISSDY LLTRKFVSHLCSGPCFQSCPNIVDLYSNLALAEGMDLYGMCSLAGRRRSLFQPKSSSDARTAAAAAANGVPIGAPIGSPMSSAAGLASSDDDVDDADAAF GPSSDAY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52390			PAR1 protein (.1)		Lus10040715 [exp]	0	1
					Lus10008049 [exp]	5.7	1.0000
					Lus10010778 [exp]	6.7	1.0000
AT1G48120			hydrolases;protein serine/thre...		Lus10008569 [exp]	9.3	1.0000
AT3G25050		XTH3	xyloglucan endotransglucosylas...		Lus10011845 [exp]	9.8	1.0000
					Lus10022145 [exp]	11.0	1.0000
AT1G26420			FAD-binding Berberine family p...		Lus10023368 [exp]	13.2	1.0000
AT5G46795		MSP2	microspore-specific promoter ...		Lus10004566 [exp]	14.8	1.0000
AT1G26480		GF14IOTA, GRF12	general regulatory factor 12 (...		Lus10026660 [exp]	16.2	1.0000
AT3G16180			Major facilitator superfamily ...		Lus10034936 [exp]	17.0	1.0000
AT3G07740		HXA2, HXA02, HA...	homolog of yeast ADA2 2A (.1.2...		Lus10012337 [exp]	17.2	1.0000

Compare expression of checked genes

Lus10040715 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.