Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59010 820 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) AT3G54030 753 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT1G63500 729 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT4G00710 719 / 0 BSK3 BR-signaling kinase 3 (.1) AT5G41260 714 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT4G35230 639 / 0 BSK1 BR-signaling kinase 1 (.1) AT1G01740 605 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) AT5G46570 599 / 0 BSK2 BR-signaling kinase 2 (.1) AT3G09240 593 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT5G01060 585 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016454 [exp] 945 / 0 AT5G59010 774 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) Lus10027743 [exp] 786 / 0 AT3G54030 824 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10035550 [exp] 779 / 0 AT3G54030 817 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10008530 [exp] 726 / 0 AT1G63500 834 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10008494 [exp] 726 / 0 AT1G63500 831 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10001998 [exp] 723 / 0 AT1G63500 811 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10030383 [exp] 674 / 0 AT4G00710 770 / 0.0 BR-signaling kinase 3 (.1) Lus10037856 [exp] 672 / 0 AT4G00710 764 / 0.0 BR-signaling kinase 3 (.1) Lus10018849 [exp] 650 / 0 AT4G00710 726 / 0.0 BR-signaling kinase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G246400 [exp] 879 / 0 AT5G59010 868 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) Potri.009G039500 [exp] 864 / 0 AT5G59010 857 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) Potri.006G093900 [exp] 803 / 0 AT3G54030 844 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.016G105800 [exp] 793 / 0 AT3G54030 835 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.014G082400 [exp] 730 / 0 AT4G00710 826 / 0.0 BR-signaling kinase 3 (.1) Potri.002G158400 [exp] 728 / 0 AT4G00710 820 / 0.0 BR-signaling kinase 3 (.1) Potri.001G104700 [exp] 714 / 0 AT1G63500 791 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.003G126700 [exp] 709 / 0 AT1G63500 805 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.004G182800 [exp] 638 / 0 AT4G35230 899 / 0.0 BR-signaling kinase 1 (.1) Potri.009G142800 [exp] 634 / 0 AT4G35230 890 / 0.0 BR-signaling kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10040719 pacid=23157653 polypeptide=Lus10040719 locus=Lus10040719.g ID=Lus10040719.BGIv1.0 annot-version=v1.0 ATGGGACTTCGTTGCTCCAAGTTGCCTCTCTGCTGCTGCCGTTCTTCCAATCTCAAGTCTAACCTCCACGCCTTCTCCGATCTCGAGAATGGCGAGCAGC TGCCAGGGTTTAGAGAGTACAGCTTAGAGCAGCTGCGGATAGCGACGGCGGGGTTCAGTCCGGACAACATAGTGTCGGAGCACGGCGAGAAAGCTCCGAA TGTGGTTTACAAAGGGAAGCTCCGTTCCGACGAGCGCTGGATCGCTGTCAAGCGCTTCAACAAGTCTGCTTGGCCTGATTCTCGTCAATTCCTTGAGGAG GCGAAAGCGGTAGGTCAGTTGAGGAGCGAGAGATTGGTGAACTTGTTAGGGTGTTGCTGTGAAGGTGAAGAGAGATTGCTTGTTGCTGAGTTCATGCCTA ATGAGACTCTTTCTAAGCATCTTTTCCACTGGGAGAATCAGCCGATGAAATGGCCAATGAGGCTGAGGGTGGCTCTCTATCTAGCTCAGGCTTTGGATTA CTGCAGTAGCAAAGGGAGAGCTCTGTACCATGATCTTAATGCATATAGGGTTTTGTTTGATCAGGAGGGTAATCCAAGGCTTTCATGCTTTGGTCTGATG AAGAACAGCAGGGATGGGAAGAGCTACAGTACGAACTTGGCGTTCACTCCTCCCGAGTACTTGCGGACTGGACGAGTTACTCCGGAGAGTGTTGTTTACA GCTTTGGAACCCTGCTGCTTGATCTTCTTAGTGGGAAGCATATACCGCCAAGCCATGCACTCGACCTCATACGGGGGAAGAATTTTATTATGCTGATGGA TTCGTGCTTGGAGGAACACATTTCGAATGACGATGGTACTGAGTTAGTGCGACTAGCCTCGCGTTGCTTACAGTTCGAACCTCGTGAAAGGCCTAATGCA AAGTCCCTTGTTATTGGTCTCACTCCCCTTCAGAAGGAAACAGGGGTTGCTTCCTATGAGTTAATGGGTATTCCGCACGGAACACAACCCTCAGAGGAAA CAACATCGCTGTCACCCTTAGGCGAAGCTTGCTCAAGGCTGGATCTTACTGCCATACATGAAATACTAGAAAAGGTTGGATACAAAGATGATGAGGGTAT TGCAAATGAGCTTTCGTTCCAGATGTGGACAGATCAAATACAGGAAACGCTCAACTCTAAGAAACGTGGCGATGCTGCTTTCCGATCAAAGGACTTCTCG ACAGCCATCGACTCCTACACACAATTCATTGATGGCGGGACAATGGTCTCCCCGACAGTGTTTGCGAGACGGTGCCTGTGCTATTTAGCAGGTGAGATGC CACAACAGGCTCTTGGAGATGCCATGCAAGCTCAAGCTGTGTCTCCTGAGTGGCCCACTGCATTCTATCTCCAAGCTGCTGCTCTCATCAGCCTTGGAAT GGACAGCGATGCACACGAGACTTTGAAAGACGGGGCTTCGTTGGAAGCCAAGAGGCATAGCAGAAACTGA
AA sequence Show only first row Show all	>Lus10040719 pacid=23157653 polypeptide=Lus10040719 locus=Lus10040719.g ID=Lus10040719.BGIv1.0 annot-version=v1.0 MGLRCSKLPLCCCRSSNLKSNLHAFSDLENGEQLPGFREYSLEQLRIATAGFSPDNIVSEHGEKAPNVVYKGKLRSDERWIAVKRFNKSAWPDSRQFLEE AKAVGQLRSERLVNLLGCCCEGEERLLVAEFMPNETLSKHLFHWENQPMKWPMRLRVALYLAQALDYCSSKGRALYHDLNAYRVLFDQEGNPRLSCFGLM KNSRDGKSYSTNLAFTPPEYLRTGRVTPESVVYSFGTLLLDLLSGKHIPPSHALDLIRGKNFIMLMDSCLEEHISNDDGTELVRLASRCLQFEPRERPNA KSLVIGLTPLQKETGVASYELMGIPHGTQPSEETTSLSPLGEACSRLDLTAIHEILEKVGYKDDEGIANELSFQMWTDQIQETLNSKKRGDAAFRSKDFS TAIDSYTQFIDGGTMVSPTVFARRCLCYLAGEMPQQALGDAMQAQAVSPEWPTAFYLQAAALISLGMDSDAHETLKDGASLEAKRHSRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59010			Protein kinase protein with te...		Lus10040719 [exp]	0	1
AT5G51560			Leucine-rich repeat protein ki...		Lus10031123 [exp]	6.4	0.9042
AT3G05470			Actin-binding FH2 (formin homo...		Lus10029897 [exp]	7.7	0.8824
AT1G65470		NFB2, FAS1	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10024521 [exp]	14.2	0.9025
AT5G43530			Helicase protein with RING/U-b...		Lus10041156 [exp]	14.9	0.8970
AT4G18425			Protein of unknown function (D...		Lus10013975 [exp]	16.7	0.8754
AT1G50660			unknown protein		Lus10040076 [exp]	17.7	0.8534
AT1G54690		HTA3 ,G-H2AX ,G...	histone H2A 3, GAMMA H2AX, gam...		Lus10003750 [exp]	24.9	0.8830
AT3G30300			O-fucosyltransferase family pr...		Lus10034356 [exp]	34.3	0.8420
AT3G56370			Leucine-rich repeat protein ki...		Lus10025223 [exp]	35.8	0.8796
AT5G46740		UBP21	ubiquitin-specific protease 21...		Lus10043126 [exp]	36.5	0.8783

Compare expression of checked genes

Lus10040719 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.