Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29525 399 / 5e-140 AtIPCS3 Arabidopsis Inositol phosphorylceramide synthase 3 (.1.2.3) AT3G54020 396 / 2e-138 AtIPCS1 Arabidopsis Inositol phosphorylceramide synthase 1 (.1) AT2G37940 390 / 4e-136 ERH1, AtIPCS2 enhancing RPW8-mediated HR-like cell death 1, Arabidopsis Inositol phosphorylceramide synthase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027742 [exp] 394 / 7e-137 AT3G54020 477 / 6e-171 Arabidopsis Inositol phosphorylceramide synthase 1 (.1) Lus10035551 [exp] 390 / 1e-135 AT3G54020 490 / 2e-176 Arabidopsis Inositol phosphorylceramide synthase 1 (.1) Lus10017199 [exp] 385 / 5e-134 AT3G54020 462 / 7e-166 Arabidopsis Inositol phosphorylceramide synthase 1 (.1) Lus10021111 [exp] 382 / 4e-133 AT3G54020 462 / 1e-165 Arabidopsis Inositol phosphorylceramide synthase 1 (.1) Lus10028111 [exp] 42 / 0.001 AT1G43580 580 / 0.0 Sphingomyelin synthetase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G105700 [exp] 407 / 2e-142 AT3G54020 493 / 1e-177 Arabidopsis Inositol phosphorylceramide synthase 1 (.1) Potri.006G093800 [exp] 402 / 9e-141 AT2G37940 490 / 2e-176 enhancing RPW8-mediated HR-like cell death 1, Arabidopsis Inositol phosphorylceramide synthase 2 (.1) Potri.001G246300 [exp] 399 / 4e-139 AT3G54020 374 / 2e-130 Arabidopsis Inositol phosphorylceramide synthase 1 (.1) Potri.002G066900 [exp] 44 / 0.0002 AT1G43580 575 / 0.0 Sphingomyelin synthetase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040720 pacid=23157898 polypeptide=Lus10040720 locus=Lus10040720.g ID=Lus10040720.BGIv1.0 annot-version=v1.0 ATGGTAGGCCCATTAGAGTCCCGAATTGTAAGGCAAGGATCTGCAGCAGCCAACCTAACGGCAATGGAAGCCGTACAGTCTGGAACAGTTTTGCTGCGAG CTGAAGTACATTCCTTTGCGCCGCTGAATTTCCCAGGATTTGGGGTTCTTGCTTTCAATTTGAGGGAAAAGGGTGCTCTGGGTGAAGATGAGGCAAGAAG AACAAGAAGCCCATTAAATGTCGGACCTTTTCCCAACCTCCCATTCCCCAAAATGCTCATCTTCTACGTTGATCGCAAGCTATGGAGGAAGCTCTCCGCG GAAACGTCGATAGAATTGTCCCTCATTGCCGAGAACTGGAAGCGTCTTCTTGCCGGAATCTTTCTTCAGTATTTACACGGATTAGCTGCTCATGGAATTC ATTACCTGCATCGGCCAGGGCCGACGCTCCAAGATGCTGGCTTTTTCCTTCTTCCGGAACTTGGTCCGGGGAAATCTTACATTAGTGAGGCCTTATTTAC ATTCATCTTTATGTGTTTTGTGTTGTGGACGTTTCACCCTTTCGTTCTGCAAAGCAAAAGAATTTATACGGTTCTGATATGGTGCAGAGTTCTTGCTTAT TTAGGGGCTTGTCAGGTTCTCCGTATTGTCACATTCTATTCGACTCAGCTTCCTGGTCCAAATTATCATTGTCGTGAGGGCTCTAAACTTGCCAGGATCC CCCCTCCAGAGAGTGCTTTTGAATTGCTTGTTATCAACTTTTCCAGAGGAGTAAACAATGGCTGCGGTGACTTGATTTTCTCTTCGCACATGATATTTAC CATCGTGTTTGTACGGACATATAACCGGTATGGTACGAAAAGGTTCATAAAACACTTAGCTTGGTTGCTTGCTGTGGTTCAAAGCCTTCTTATTCTGGCA TCTCGCAAGCATTACACTGTTGATATAGTCGTTGCATGGTACACGGTAAACTTAGTCATGTTCTTCCTCGACCGGAAATTAACAGAATTACCTGACCGGC CGGGAGTCACATCTCTGCCTTTGCTGCCTCAGACCAATAAGGATAGCAGGAACAGAGAGCATCAGAATCTACTAGGCGTGACTTCTGCTGAAGTAACAGA TTGA
AA sequence Show only first row Show all	>Lus10040720 pacid=23157898 polypeptide=Lus10040720 locus=Lus10040720.g ID=Lus10040720.BGIv1.0 annot-version=v1.0 MVGPLESRIVRQGSAAANLTAMEAVQSGTVLLRAEVHSFAPLNFPGFGVLAFNLREKGALGEDEARRTRSPLNVGPFPNLPFPKMLIFYVDRKLWRKLSA ETSIELSLIAENWKRLLAGIFLQYLHGLAAHGIHYLHRPGPTLQDAGFFLLPELGPGKSYISEALFTFIFMCFVLWTFHPFVLQSKRIYTVLIWCRVLAY LGACQVLRIVTFYSTQLPGPNYHCREGSKLARIPPPESAFELLVINFSRGVNNGCGDLIFSSHMIFTIVFVRTYNRYGTKRFIKHLAWLLAVVQSLLILA SRKHYTVDIVVAWYTVNLVMFFLDRKLTELPDRPGVTSLPLLPQTNKDSRNREHQNLLGVTSAEVTD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29525		AtIPCS3	Arabidopsis Inositol phosphory...		Lus10040720 [exp]	0	1
AT5G19050			alpha/beta-Hydrolases superfam...		Lus10004426 [exp]	2.4	0.7561
AT4G30080	ARF	ARF16	auxin response factor 16 (.1)		Lus10019940 [exp]	2.8	0.7765
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Lus10012801 [exp]	5.6	0.6544
AT1G51590		MNS1, MANIB	ALPHA-MANNOSIDASE IB, alpha-ma...		Lus10034820 [exp]	11.5	0.7706
AT4G24550			Clathrin adaptor complexes med...		Lus10024548 [exp]	11.6	0.7409
AT2G19160			Core-2/I-branching beta-1,6-N-...		Lus10006952 [exp]	12.0	0.7122
AT4G10570		UBP9	ubiquitin-specific protease 9 ...		Lus10001661 [exp]	14.8	0.7490
AT2G38650		GAUT7, LGT7	LIKE GLYCOSYL TRANSFERASE 7, g...		Lus10035615 [exp]	15.9	0.6878
AT2G19160			Core-2/I-branching beta-1,6-N-...		Lus10025464 [exp]	18.0	0.6702
AT2G19600		ATKEA4	K+ efflux antiporter 4, K+ eff...		Lus10040549 [exp]	18.2	0.7292

Compare expression of checked genes

Lus10040720 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.