Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59020 228 / 8e-64 Protein of unknown function (DUF3527) (.1) AT2G29510 211 / 1e-57 Protein of unknown function (DUF3527) (.1) AT2G37930 142 / 6e-36 Protein of unknown function (DUF3527) (.1) AT5G01030 143 / 4e-35 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) AT1G63520 97 / 9e-21 Protein of unknown function (DUF3527) (.1) AT2G33360 92 / 3e-19 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) AT1G04490 91 / 3e-19 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) AT4G11450 69 / 1e-11 Protein of unknown function (DUF3527) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016455 [exp] 1347 / 0 AT5G59020 293 / 2e-87 Protein of unknown function (DUF3527) (.1) Lus10021110 [exp] 173 / 8e-45 AT5G01030 291 / 1e-86 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) Lus10017200 [exp] 173 / 1e-44 AT5G01030 229 / 4e-64 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) Lus10023729 [exp] 95 / 6e-20 AT2G33360 355 / 9e-115 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) Lus10014479 [exp] 92 / 6e-19 AT2G33360 287 / 4e-91 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) Lus10002006 [exp] 77 / 3e-14 AT4G11450 477 / 3e-159 Protein of unknown function (DUF3527) (.1) Lus10035493 [exp] 76 / 8e-14 AT4G11450 462 / 2e-151 Protein of unknown function (DUF3527) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G039300 [exp] 473 / 2e-154 AT5G59020 351 / 1e-107 Protein of unknown function (DUF3527) (.1) Potri.001G246200 [exp] 456 / 6e-148 AT5G59020 362 / 9e-112 Protein of unknown function (DUF3527) (.1) Potri.016G105500 [exp] 167 / 7e-43 AT5G01030 257 / 5e-73 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) Potri.006G093600 [exp] 158 / 1e-39 AT5G01030 219 / 6e-60 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) Potri.010G066200 [exp] 103 / 1e-22 AT2G33360 333 / 3e-106 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) Potri.008G171400 [exp] 98 / 5e-21 AT2G33360 327 / 1e-103 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) Potri.003G127500 [exp] 87 / 2e-17 AT4G11450 521 / 2e-176 Protein of unknown function (DUF3527) (.1) Potri.001G104200 [exp] 80 / 3e-15 AT4G11450 530 / 5e-180 Protein of unknown function (DUF3527) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0395 [flax] [poplar] Tubby_C PF12043 [flax] [poplar] DUF3527 Domain of unknown function (DUF3527)
Representative CDS sequence Show only first row Show all	>Lus10040721 pacid=23157919 polypeptide=Lus10040721 locus=Lus10040721.g ID=Lus10040721.BGIv1.0 annot-version=v1.0 ATGGAAGATCACTTGGAGCTTGAAAGAAATTTAAGGAATCATCCTGAGAGATCCAAGCCTGAAAAGCATCTGTCTTATTCCGATCTTCACCATCAGATCA CGGGGAGTGTGAAAGAGATCCCGAGTAGAATAGTAGGGGCTCAGAAGAGGCAACATAAGAAGGCAGCAGCAACTGAAGAAGAGGAGCTTGTGAAGTACAT GTCAAATTTGCCAAGCTATCTGGAGAAAGGTAGAGCTCAAAAAGAGAAAGCTTTGAATGTTGGAGTGCTAGACTGGAGTCGTCTCCAAAAGTGGCAGTGC AGCAACCATCAGCCTAGAAGGTTTTCAGTGTCGAGTAACAGCAATCCGTGCTCATCCTACGCATCATCGGAAGGTGAACCTGCTATGAGTTCGAGTAGAG GTCCGATGTTTTCTCCTTCTCGTCAAAGGATGCGGCGTCCTTCTTTGCAATTTCAACTGTCGTCATCTCCAGCAATAGGGAGTTGTGTTGAAGTTAATGG AAGTTCTCAACTTCACAATCATTTGCAGACAACTAACACTGTAACTGAACAAGCAACATCCAGGACAGGCAAAGCTATTTCACGTGACCCTCAAGAAATG AATTTTGAACAATGGAAGCGAAAGGTCGAGGAACAAAAAATGAATAACATGGACCGGGAATGCACAAGGAGACCTGAGAAGATGCAGGAACGGAAGGTGA ACGTTGTAGGCCAGGAAAGATTCCAAAAGGGCAAACCAATTGTTCTTCTTCTACCAAAAGATGCTCCAAAGAATCATCCTCACTCTGGGATTCCCCAGTG TCCGAAGTCCACAACAATTCAAGAAGGTCAAACACCAGTAAATCAAAGGAGTGCTCCACAGAAAAGTGGGATACGTTATACAGTGGTCAGTTCAACTGAA AGTGAGCGAGACGTTGAGAGACAAAGGTGCTTTAGGGATGCAGAGAATGTAAGCAATGGTCGCAGCATGTCGGAGGTGAGAGAATCTGCCAGACCGCAAA TAAATTCTGGTCTGAAACCAGGCAAGGTGGCAACTCCAGAAAAGATAAGGAGCACATCTCCTTTCCGAAGGCTTAGTATAGGTATGGGAAAGTTAGCTAG AAGTCCGAGTCAAAAAGAGGCTGCAACTAGTAAGTCTACAAACTCAATTGTGGAAGATGGTCTGGCTCTTAGACAGGAAACATCAAGTTGTGACAAACGA AATGCTACTAGTCGAGGCAGGTCTAGATCAAGCCCTTTGAGACGACTACTGGACCCATTACTGAAGCCAAAAACGGCCCCAACATCGAGAGATTCTACTT CAGCAGAGACATGCTATAAGCCATCTAATAGGCAAGCGTTCCCTTCATCCGGTAGTTCACAAGCTGGAAGAGCAAGCTTGGATGTGAACAAGTACAGGAC TATAAATACTCAGAAGAAACCAGCTTCATTTCAGGCTTTGTTGCGAGTTGCAGTTAAGAACGGGCAGCCTCTTTTTACATTTGCTGTTGACAACGAACCT GATATCCTCGCTGCCACGGTGAAGAAGTTAAGTACCTCACAGAGTGAATATTATAGTTGCGTTTATACTTTCTTTTCCATTCAAGAATCAAAGAAGAATG GGGGTTGGTTAAATCAAGGTGGGAAAGGGAAGGGCAAAGGTAATGAGTATGTCCACACTGTTGTAGCCCAACTCAGAGCTTCTGGCACTCGGTTAGCCAG AGAGCTTGTTCTGTTTGCTGTCGACTTGATACAGACCGAACAGCTCGAAACGTTGAATTGCCAGCCGAATGACGAGCTTGCTGCTATTGTCGTCAAGCCT ACGATGGAGAATGAAAGCGGCATCAGTACCACTGCTGTACTTCCAAGTGGTGTACATTCAATGCCAACCAAAGGAGGGCCTTCATCCTTGCTTCAACGTT GGAGAGCTGGGGGATCGTGTGATTGCGGAGGTTGGGACTTGGGTTGTAAGCTTCAAATTCTAGCCAACAATCCAGGTGCACCATCCGAGCCTAACTCTAC AGCTGAGAAATTTGAGCTCATCCCCCAGGGAGTAGAAGGTAACGGTCGGCCTGTGTTCAGCCTGACTCCTTTTAAGGATGGTATCCACACGGTTGAGTTT CATTCCTCACTTTCAACTCTGCAAGCATTCTCCCTCTGCATTGCAGCTGTAGATGGTAAGAAACTTAACTGCAACTCGTTTGAGGAAAAAGCTACATTGG AGGCCATGATAGCTCGCAGCGAGGAGGCTCCCGCTACACGGTACATCCCATATCCACCGGTTTCTCCAGCGGGAAGGGTATAA
AA sequence Show only first row Show all	>Lus10040721 pacid=23157919 polypeptide=Lus10040721 locus=Lus10040721.g ID=Lus10040721.BGIv1.0 annot-version=v1.0 MEDHLELERNLRNHPERSKPEKHLSYSDLHHQITGSVKEIPSRIVGAQKRQHKKAAATEEEELVKYMSNLPSYLEKGRAQKEKALNVGVLDWSRLQKWQC SNHQPRRFSVSSNSNPCSSYASSEGEPAMSSSRGPMFSPSRQRMRRPSLQFQLSSSPAIGSCVEVNGSSQLHNHLQTTNTVTEQATSRTGKAISRDPQEM NFEQWKRKVEEQKMNNMDRECTRRPEKMQERKVNVVGQERFQKGKPIVLLLPKDAPKNHPHSGIPQCPKSTTIQEGQTPVNQRSAPQKSGIRYTVVSSTE SERDVERQRCFRDAENVSNGRSMSEVRESARPQINSGLKPGKVATPEKIRSTSPFRRLSIGMGKLARSPSQKEAATSKSTNSIVEDGLALRQETSSCDKR NATSRGRSRSSPLRRLLDPLLKPKTAPTSRDSTSAETCYKPSNRQAFPSSGSSQAGRASLDVNKYRTINTQKKPASFQALLRVAVKNGQPLFTFAVDNEP DILAATVKKLSTSQSEYYSCVYTFFSIQESKKNGGWLNQGGKGKGKGNEYVHTVVAQLRASGTRLARELVLFAVDLIQTEQLETLNCQPNDELAAIVVKP TMENESGISTTAVLPSGVHSMPTKGGPSSLLQRWRAGGSCDCGGWDLGCKLQILANNPGAPSEPNSTAEKFELIPQGVEGNGRPVFSLTPFKDGIHTVEF HSSLSTLQAFSLCIAAVDGKKLNCNSFEEKATLEAMIARSEEAPATRYIPYPPVSPAGRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59020			Protein of unknown function (D...		Lus10040721 [exp]	0	1
AT5G18830	SBP	ATSPL7, SPL7	squamosa promoter binding prot...		Lus10012782 [exp]	1.0	0.9230
AT3G24630			unknown protein		Lus10043221 [exp]	2.0	0.8800
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10034651 [exp]	3.5	0.9116
AT5G64440		ATFAAH	fatty acid amide hydrolase (.1...		Lus10020468 [exp]	6.7	0.8575
AT2G36350			Protein kinase superfamily pro...		Lus10020571 [exp]	6.9	0.8630
AT5G66450			Phosphatidic acid phosphatase ...		Lus10041774 [exp]	10.5	0.8640
AT1G65730		YSL7	YELLOW STRIPE like 7 (.1)		Lus10043408 [exp]	11.8	0.8676
AT5G04460			RING/U-box superfamily protein...		Lus10037928 [exp]	12.2	0.8422
AT2G25760			Protein kinase family protein ...		Lus10025827 [exp]	12.2	0.8477
AT1G24120		ARL1	ARG1-like 1 (.1)		Lus10029202 [exp]	13.1	0.8394

Compare expression of checked genes

Lus10040721 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.