Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29500 189 / 1e-62 HSP20-like chaperones superfamily protein (.1) AT1G07400 172 / 9e-56 HSP20-like chaperones superfamily protein (.1) AT3G46230 171 / 1e-55 ATHSP17.4 ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 17.4, heat shock protein 17.4 (.1) AT5G59720 170 / 8e-55 HSP18.2 HSP18.1CI heat shock protein 18.2 (.1) AT1G53540 168 / 4e-54 HSP20-like chaperones superfamily protein (.1) AT1G59860 156 / 2e-49 HSP20-like chaperones superfamily protein (.1) AT4G10250 101 / 2e-27 ATHSP22.0 HSP20-like chaperones superfamily protein (.1) AT5G12020 73 / 6e-17 HSP17.6II 17.6 kDa class II heat shock protein (.1) AT5G37670 72 / 2e-16 HSP15.7CI HSP20-like chaperones superfamily protein (.1) AT5G12030 69 / 3e-15 AT-HSP17.6A heat shock protein 17.6A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040722 [exp] 224 / 2e-76 AT1G07400 214 / 2e-72 HSP20-like chaperones superfamily protein (.1) Lus10016458 [exp] 224 / 4e-76 AT2G29500 214 / 3e-72 HSP20-like chaperones superfamily protein (.1) Lus10016456 [exp] 222 / 1e-75 AT1G07400 213 / 8e-72 HSP20-like chaperones superfamily protein (.1) Lus10016457 [exp] 221 / 7e-75 AT1G07400 216 / 4e-73 HSP20-like chaperones superfamily protein (.1) Lus10009085 [exp] 170 / 1e-54 AT1G53540 232 / 2e-79 HSP20-like chaperones superfamily protein (.1) Lus10040830 [exp] 150 / 3e-47 AT1G53540 236 / 6e-81 HSP20-like chaperones superfamily protein (.1) Lus10026262 [exp] 104 / 1e-28 AT4G10250 152 / 5e-47 HSP20-like chaperones superfamily protein (.1) Lus10000932 [exp] 103 / 3e-28 AT4G10250 200 / 2e-65 HSP20-like chaperones superfamily protein (.1) Lus10042408 [exp] 102 / 1e-27 AT4G10250 154 / 1e-47 HSP20-like chaperones superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G187450 [exp] 197 / 1e-65 AT2G29500 221 / 5e-75 HSP20-like chaperones superfamily protein (.1) Potri.009G039200 [exp] 196 / 3e-65 AT1G07400 201 / 3e-67 HSP20-like chaperones superfamily protein (.1) Potri.004G187202 [exp] 196 / 5e-65 AT2G29500 209 / 1e-70 HSP20-like chaperones superfamily protein (.1) Potri.009G147900 [exp] 196 / 5e-65 AT2G29500 193 / 5e-64 HSP20-like chaperones superfamily protein (.1) Potri.009G148000 [exp] 195 / 1e-64 AT2G29500 190 / 7e-63 HSP20-like chaperones superfamily protein (.1) Potri.004G187400 [exp] 192 / 1e-63 AT1G07400 193 / 7e-64 HSP20-like chaperones superfamily protein (.1) Potri.019G081200 [exp] 191 / 3e-63 AT2G29500 186 / 3e-61 HSP20-like chaperones superfamily protein (.1) Potri.019G081250 [exp] 189 / 2e-62 AT2G29500 182 / 6e-60 HSP20-like chaperones superfamily protein (.1) Potri.001G238700 [exp] 187 / 1e-61 AT1G53540 195 / 8e-65 HSP20-like chaperones superfamily protein (.1) Potri.009G049800 [exp] 184 / 1e-60 AT2G29500 152 / 4e-48 HSP20-like chaperones superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0190 [flax] [poplar] HSP20 PF00011 [flax] [poplar] HSP20 Hsp20/alpha crystallin family
Representative CDS sequence Show only first row Show all	>Lus10040723 pacid=23157728 polypeptide=Lus10040723 locus=Lus10040723.g ID=Lus10040723.BGIv1.0 annot-version=v1.0 ATGTCGCTGATTCCAAGCTTCTTCGGCAACCGCCGCTCCGACCCGTTCTCAGCTCTGGACGTGTGGGATCCGTTCAGGGATTTCTCCTCCTCTTCTCTGA TCCCCAGCGGCGGGGAGAACTCTGCGTTCGTGAACACGCGGATTGACTGGAAGGAGACTCCGGAGGCGCACGTGTTCAAGGCCGACCTACCGGGGCTGAA GAAGGAGGAGATTAAGGTGGAGGTGGAGGAAGATCGGGTGCTGCAGATCAGCGGGGAGAGGAACGTGGAGAAGGAGGATAAGAACGACACGTGGCACAGG GTTGAGAGGAGCAGCGGGAAATTCATGAGAAGGTTCAGGCTCCCCGAGAATGCGAAGATGGATGAGGTGAAGGCGGCGATGGAGAACGGCGTGCTGACGG TGACCGTCCCCAAGGCGGAGGTGAAGAAGCCTGAAGTCAAGGCCATCGAGATCTCTGGTTAG
AA sequence Show only first row Show all	>Lus10040723 pacid=23157728 polypeptide=Lus10040723 locus=Lus10040723.g ID=Lus10040723.BGIv1.0 annot-version=v1.0 MSLIPSFFGNRRSDPFSALDVWDPFRDFSSSSLIPSGGENSAFVNTRIDWKETPEAHVFKADLPGLKKEEIKVEVEEDRVLQISGERNVEKEDKNDTWHR VERSSGKFMRRFRLPENAKMDEVKAAMENGVLTVTVPKAEVKKPEVKAIEISG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29500			HSP20-like chaperones superfam...		Lus10040723 [exp]	0	1
AT5G37670		HSP15.7CI	HSP20-like chaperones superfam...		Lus10020815 [exp]	5.7	0.8577
AT5G08290		YLS8	YELLOW-LEAF-SPECIFIC GENE 8, m...		Lus10010189 [exp]	7.7	0.8109
AT2G29500			HSP20-like chaperones superfam...		Lus10016458 [exp]	9.1	0.8207
AT1G07400			HSP20-like chaperones superfam...		Lus10040722 [exp]	13.4	0.8181
AT3G03773			HSP20-like chaperones superfam...		Lus10024119 [exp]	19.2	0.7531
AT5G13490		AAC2	ADP/ATP carrier 2 (.1.2)		Lus10031843 [exp]	21.0	0.7696
AT4G27670		HSP21	heat shock protein 21 (.1)		Lus10022322 [exp]	22.0	0.7771
AT1G16810			unknown protein		Lus10026960 [exp]	24.5	0.7736
AT4G10250		ATHSP22.0	HSP20-like chaperones superfam...		Lus10042408 [exp]	26.5	0.7242
AT2G32120		HSP70T-2	heat-shock protein 70T-2 (.1.2...		Lus10041207 [exp]	29.2	0.7773

Compare expression of checked genes

Lus10040723 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.