Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59590 409 / 6e-140 UGT76E2 UDP-glucosyl transferase 76E2 (.1) AT5G59580 393 / 7e-134 UGT76E1 UDP-glucosyl transferase 76E1 (.1) AT3G11340 388 / 4e-132 UGT76B1 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) AT3G46660 388 / 1e-131 UGT76E12 UDP-glucosyl transferase 76E12 (.1) AT5G38010 385 / 9e-131 UDP-Glycosyltransferase superfamily protein (.1) AT3G46670 381 / 4e-129 UGT76E11 UDP-glucosyl transferase 76E11 (.1) AT3G55700 370 / 1e-124 UDP-Glycosyltransferase superfamily protein (.1) AT5G38040 369 / 2e-124 UDP-Glycosyltransferase superfamily protein (.1) AT5G05880 368 / 4e-124 UDP-Glycosyltransferase superfamily protein (.1) AT3G46680 367 / 1e-123 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016460 [exp] 878 / 0 AT5G59590 400 / 2e-136 UDP-glucosyl transferase 76E2 (.1) Lus10016461 [exp] 618 / 0 AT3G11340 381 / 3e-129 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Lus10040246 [exp] 403 / 2e-137 AT3G11340 488 / 3e-171 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Lus10037268 [exp] 387 / 7e-131 AT3G11340 447 / 1e-154 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Lus10004671 [exp] 383 / 7e-130 AT3G55700 450 / 4e-156 UDP-Glycosyltransferase superfamily protein (.1) Lus10016459 [exp] 377 / 3e-127 AT5G59590 357 / 3e-119 UDP-glucosyl transferase 76E2 (.1) Lus10004672 [exp] 364 / 1e-121 AT3G11340 417 / 1e-142 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Lus10024584 [exp] 300 / 5e-97 AT1G22400 570 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10032218 [exp] 300 / 7e-97 AT1G22380 564 / 0.0 UDP-glucosyl transferase 85A3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G245900 [exp] 475 / 6e-166 AT3G46660 452 / 7e-157 UDP-glucosyl transferase 76E12 (.1) Potri.010G195600 [exp] 417 / 3e-143 AT3G55700 515 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.010G195300 [exp] 411 / 7e-141 AT3G11340 485 / 6e-170 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Potri.010G195500 [exp] 404 / 5e-138 AT3G11340 483 / 3e-169 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Potri.006G039300 [exp] 387 / 5e-131 AT5G59590 347 / 2e-115 UDP-glucosyl transferase 76E2 (.1) Potri.009G039100 [exp] 338 / 1e-107 AT3G09360 412 / 7e-134 Cyclin/Brf1-like TBP-binding protein (.1) Potri.002G098400 [exp] 301 / 9e-98 AT1G22360 640 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.001G313000 [exp] 300 / 4e-97 AT1G22360 564 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052300 [exp] 289 / 8e-93 AT1G22360 603 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052166 [exp] 288 / 3e-92 AT1G22360 607 / 0.0 UDP-glucosyl transferase 85A2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10040725 pacid=23157573 polypeptide=Lus10040725 locus=Lus10040725.g ID=Lus10040725.BGIv1.0 annot-version=v1.0 ATGGGAAGTGATGAACAGTACTACCCTCGTCATCTGGTGTTAGTCCCATGTCCTTACCAAGGCCATATCAATCCTATGCTTCAGCTCGCCACCATACTTC ACTCAAGAGGATTCTCCATCTCTATCTTACACGCTCAGTTCAACGCCCCTTCTCCAAGAAACCACCCTCATTTCAGGTTCATTTCTATACCAGATAGCTT GCCCGACGAGCTCGTTTCTTCAGGCAACATCCCAGCCATCCTGTTAGCTGTCAACGCCAACTGTCGCAAGCCGTTGAAGAATCTCGTATCTCAAATGATG CGTGGTGAAAAGTCAAGTAGTAGTCACATAGCTTGCATCGTTTATGATGAACTCATGTACTGCTCTGAAGCTGTAGCGAAATCTCTCGGTCTTCCCAGCA TCATGTTGCGAACCAATACCGTTTCGACCTTCATCGCTCGTGACCACGTTCTGAAGTTGATCGACCAAGGTCGAGTCCCACTGCAAGACTCAATTCTAGA CCAACCGGTCCCAACGCACTACCCGCTAAGATACAAAGACCTCCCGACATCAATCTTCAAGCCAGTGACGAACTTCATCGAAATCGTCAACAACCTCCGC GAGGTGAGATCGAGCTCAGCCGTGATATGGAACACAATGAACTGTCTGGAGAATTCACTACTCTCCCAAGTAAAGCAACAATGCAAAGTACCAATCTTTA CAGTCGGGCCAATGCACAAATTCTCCCCACCAATCTCCACCAGCTTACTAAAAGAAGACTACACCTGCATGCCATGGCTCGACTCGCAGGCACCAAAATC GGTTATCTACGTCAGCCTGGGGAGCCTGGCATGCATAAGCGAGTCCGAGTTAGCCGAGATGTCATGGGGGTTAGCCAACTCCAATATCCCCTTCCTCTGG GTGGTTCGACCCGGTTTGGTTCGTGGTTCAACCGCCCTTCCAACCGGGTTCAAACAAGCCGTGGGTGACAGAGGTCGAATCGTGCAATGGGCCCCACAGA AGGAAGTTCTGGCACATTATGCTATAGGTGGGTTCTGGAGCCACTGCGGATGGAACTCGACGATGGAGAGTATCTGCGAAGGGGTGCCGTTGGTTTGCAG GCCGAATTTCGCGGACCAGAAGGTGACAGCTAGGTATGTTACTCATGTGTGGAGAGTTGGGTTGCAGCTTGAAGGTGATGAGCTGGAGAGAGAAGTGGTG AGTGGGAGTTTGAGGAGGTTGATGATTGGGGAAGAAGGTGACGAGATCAGGAGAAGAGCAGAGGAGGTTAGGGGGAAAGTGGAGGTGGAGACGAGGAGAG GTGGGTCGTCGGTCAAGGATTTGGATGAGTTGGTGAACATGATTCGGTCGTTCTAG
AA sequence Show only first row Show all	>Lus10040725 pacid=23157573 polypeptide=Lus10040725 locus=Lus10040725.g ID=Lus10040725.BGIv1.0 annot-version=v1.0 MGSDEQYYPRHLVLVPCPYQGHINPMLQLATILHSRGFSISILHAQFNAPSPRNHPHFRFISIPDSLPDELVSSGNIPAILLAVNANCRKPLKNLVSQMM RGEKSSSSHIACIVYDELMYCSEAVAKSLGLPSIMLRTNTVSTFIARDHVLKLIDQGRVPLQDSILDQPVPTHYPLRYKDLPTSIFKPVTNFIEIVNNLR EVRSSSAVIWNTMNCLENSLLSQVKQQCKVPIFTVGPMHKFSPPISTSLLKEDYTCMPWLDSQAPKSVIYVSLGSLACISESELAEMSWGLANSNIPFLW VVRPGLVRGSTALPTGFKQAVGDRGRIVQWAPQKEVLAHYAIGGFWSHCGWNSTMESICEGVPLVCRPNFADQKVTARYVTHVWRVGLQLEGDELEREVV SGSLRRLMIGEEGDEIRRRAEEVRGKVEVETRRGGSSVKDLDELVNMIRSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59590		UGT76E2	UDP-glucosyl transferase 76E2 ...		Lus10040725 [exp]	0	1
AT1G11050			Protein kinase superfamily pro...		Lus10018861 [exp]	5.5	0.8123
AT1G05675			UDP-Glycosyltransferase superf...		Lus10039041 [exp]	13.5	0.7911
AT3G58040		SINAT2	seven in absentia of Arabidops...		Lus10013739 [exp]	14.6	0.8160
AT2G40095			Alpha/beta hydrolase related p...		Lus10040195 [exp]	16.0	0.8277
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10019177 [exp]	16.6	0.8089
AT1G55200			Protein kinase protein with ad...		Lus10008566 [exp]	17.0	0.8039
AT1G04280			P-loop containing nucleoside t...		Lus10021226 [exp]	42.7	0.7958
AT1G69500		CYP704B1	"cytochrome P450, family 704, ...		Lus10037157 [exp]	52.0	0.7881
					Lus10041677 [exp]	58.6	0.7808
AT2G44130			Galactose oxidase/kelch repeat...		Lus10016214 [exp]	61.8	0.7589

Compare expression of checked genes

Lus10040725 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.