Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26975 120 / 2e-35 Ctr copper transporter family (.1) AT5G59030 116 / 1e-33 COPT1 copper transporter 1 (.1) AT5G59040 108 / 8e-31 COPT3 copper transporter 3 (.1) AT3G46900 104 / 7e-29 COPT2 copper transporter 2 (.1) AT2G37925 103 / 1e-28 COPT4 copper transporter 4 (.1) AT5G20650 61 / 4e-12 COPT5 copper transporter 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016463 [exp] 145 / 2e-45 AT2G26975 92 / 5e-25 Ctr copper transporter family (.1) Lus10016464 [exp] 133 / 3e-40 AT5G59030 151 / 1e-47 copper transporter 1 (.1) Lus10021108 [exp] 122 / 4e-36 AT2G37925 120 / 2e-35 copper transporter 4 (.1) Lus10016462 [exp] 119 / 7e-36 AT5G59030 76 / 3e-19 copper transporter 1 (.1) Lus10017204 [exp] 90 / 7e-24 AT5G59030 88 / 3e-23 copper transporter 1 (.1) Lus10021107 [exp] 82 / 2e-20 AT5G59040 87 / 1e-22 copper transporter 3 (.1) Lus10017205 [exp] 80 / 1e-19 AT2G26975 87 / 2e-22 Ctr copper transporter family (.1) Lus10023045 [exp] 74 / 4e-17 AT2G26975 84 / 2e-21 Ctr copper transporter family (.1) Lus10032428 [exp] 71 / 6e-16 AT2G26975 87 / 1e-22 Ctr copper transporter family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G038700 [exp] 149 / 7e-47 AT2G26975 133 / 2e-40 Ctr copper transporter family (.1) Potri.009G038800 [exp] 132 / 7e-40 AT5G59030 148 / 4e-46 copper transporter 1 (.1) Potri.001G246000 [exp] 129 / 1e-38 AT5G59030 134 / 9e-41 copper transporter 1 (.1) Potri.006G093300 [exp] 122 / 2e-36 AT2G37925 114 / 3e-33 copper transporter 4 (.1) Potri.006G093200 [exp] 103 / 8e-29 AT3G46900 89 / 6e-23 copper transporter 2 (.1) Potri.006G219200 [exp] 59 / 2e-11 AT5G20650 140 / 1e-43 copper transporter 5 (.1) Potri.006G140700 [exp] 57 / 9e-11 AT5G20650 151 / 7e-48 copper transporter 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04145 [flax] [poplar] Ctr Ctr copper transporter family
Representative CDS sequence Show only first row Show all	>Lus10040726 pacid=23157858 polypeptide=Lus10040726 locus=Lus10040726.g ID=Lus10040726.BGIv1.0 annot-version=v1.0 ATGCCGCCCAGCATGGACATGACCGGCGGCGGCGGCGGCGGAGGAATGAACGTCACCCACCAACGGAAGATGATGATGCACATGACCTTCTACTGGGGAT CGGACGCCCTGATCCTATTCAAGGGATGGCCGGGGACCCAACCCGCGATGTACGCTCTGTCCCTTGTGGTGGTCTTCGCTCTGGCGTTTCTCGTGGAATG GCTGTCGGGTTCTCGGTTGATCCGGAAGGGGACGGGTCGGGTGGCGGCCGGGTTGATCCGGACGGCGATGCACGCCGTCAGGGTGGGACTTGCTTACATG GTGATGCTGGCGTTGATGTCGTTCAACGGCGGAGTGTTTCTGGCGGCGGTGGCTGGACACGCTTTGGGGTTTTTGGTGTTCGGGAGTAAGGTGTGGGAGA AGGATGAGGTTGATTCGGTTTCCGGTGGTTATCGTAAGGAGTCGGAGGATTGCCGGGATCTGCCTCCGATGAGATGTTGA
AA sequence Show only first row Show all	>Lus10040726 pacid=23157858 polypeptide=Lus10040726 locus=Lus10040726.g ID=Lus10040726.BGIv1.0 annot-version=v1.0 MPPSMDMTGGGGGGGMNVTHQRKMMMHMTFYWGSDALILFKGWPGTQPAMYALSLVVVFALAFLVEWLSGSRLIRKGTGRVAAGLIRTAMHAVRVGLAYM VMLALMSFNGGVFLAAVAGHALGFLVFGSKVWEKDEVDSVSGGYRKESEDCRDLPPMRC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26975			Ctr copper transporter family ...		Lus10040726 [exp]	0	1
					Lus10040440 [exp]	11.0	0.7944
AT2G24840	MADS	DIA, AGL61	DIANA, AGAMOUS-like 61 (.1)		Lus10030663 [exp]	11.4	0.8009
AT4G30030			Eukaryotic aspartyl protease f...		Lus10031450 [exp]	18.1	0.7733
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10032406 [exp]	27.7	0.7767
AT3G12910	NAC		NAC (No Apical Meristem) domai...		Lus10015743 [exp]	29.3	0.7326
AT5G09360		LAC14	laccase 14 (.1)		Lus10026812 [exp]	33.4	0.7366
AT1G31720			Protein of unknown function (D...		Lus10034746 [exp]	38.1	0.7579
AT5G43500		ATARP9	actin-related protein 9 (.1.2)		Lus10021206 [exp]	39.6	0.7661
AT4G16270			Peroxidase superfamily protein...		Lus10017069 [exp]	41.5	0.7414
AT4G25490	AP2_ERF	DREB1B, CBF1, A...	DRE BINDING PROTEIN 1B, C-repe...		Lus10027414 [exp]	42.3	0.7198

Compare expression of checked genes

Lus10040726 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.