Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29420 203 / 7e-66 GST25, ATGSTU7 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) AT3G09270 197 / 1e-63 ATGSTU8 glutathione S-transferase TAU 8 (.1) AT2G29450 191 / 6e-61 ATGSTU1, AT103-1A, ATGSTU5 ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 1, glutathione S-transferase tau 5 (.1) AT2G29480 191 / 7e-61 GST20, ATGSTU2 GLUTATHIONE S-TRANSFERASE 20, glutathione S-transferase tau 2 (.1) AT2G29490 188 / 6e-60 GST19, ATGSTU1 GLUTATHIONE S-TRANSFERASE 19, glutathione S-transferase TAU 1 (.1) AT2G29460 188 / 6e-60 GST22, ATGSTU4 GLUTATHIONE S-TRANSFERASE 22, glutathione S-transferase tau 4 (.1) AT2G29470 181 / 4e-57 GST21, ATGSTU3 GLUTATHIONE S-TRANSFERASE 21, glutathione S-transferase tau 3 (.1) AT2G29440 180 / 9e-57 GST24, ATGSTU6 GLUTATHIONE S-TRANSFERASE 24, glutathione S-transferase tau 6 (.1) AT1G53680 172 / 2e-53 ATGSTU28 glutathione S-transferase TAU 28 (.1) AT1G59700 168 / 7e-52 ATGSTU16 glutathione S-transferase TAU 16 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021103 [exp] 221 / 9e-73 AT3G09270 250 / 1e-84 glutathione S-transferase TAU 8 (.1) Lus10021102 [exp] 220 / 2e-72 AT3G09270 245 / 2e-82 glutathione S-transferase TAU 8 (.1) Lus10040764 [exp] 218 / 1e-71 AT2G29420 229 / 6e-76 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10016469 [exp] 217 / 5e-71 AT2G29420 230 / 2e-76 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10040761 [exp] 214 / 5e-70 AT2G29420 233 / 1e-77 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10016471 [exp] 205 / 2e-66 AT2G29420 234 / 8e-78 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10016467 [exp] 196 / 5e-63 AT2G29420 207 / 2e-67 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10001640 [exp] 182 / 2e-57 AT2G29420 206 / 6e-67 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10017208 [exp] 175 / 2e-54 AT3G09270 212 / 3e-69 glutathione S-transferase TAU 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G023200 [exp] 181 / 5e-57 AT3G09270 189 / 1e-60 glutathione S-transferase TAU 8 (.1) Potri.016G023340 [exp] 178 / 4e-56 AT2G29420 194 / 3e-62 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.006G024200 [exp] 173 / 5e-54 AT2G29420 188 / 4e-60 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.010G061600 [exp] 172 / 1e-53 AT2G29420 172 / 7e-54 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.010G061200 [exp] 171 / 2e-53 AT3G09270 202 / 8e-66 glutathione S-transferase TAU 8 (.1) Potri.010G070900 [exp] 169 / 3e-52 AT2G29420 221 / 9e-73 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.010G061800 [exp] 167 / 9e-52 AT2G29420 187 / 1e-59 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.002G254000 [exp] 166 / 4e-51 AT2G29420 167 / 1e-51 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.012G052200 [exp] 165 / 6e-51 AT2G29420 220 / 2e-72 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.010G035500 [exp] 165 / 1e-50 AT1G10370 301 / 2e-104 GLUTATHIONE S-TRANSFERASE U17, GLUTATHIONE S-TRANSFERASE 30B, GLUTATHIONE S-TRANSFERASE 30, EARLY-RESPONSIVE TO DEHYDRATION 9, GLUTATHIONE S-TRANSFERASE TAU 17, Glutathione S-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF02798 [flax] [poplar] GST_N Glutathione S-transferase, N-terminal domain CL0497 [flax] [poplar] GST_C PF00043 [flax] [poplar] GST_C Glutathione S-transferase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10040727 pacid=23157706 polypeptide=Lus10040727 locus=Lus10040727.g ID=Lus10040727.BGIv1.0 annot-version=v1.0 ATGTCAGGCGAACAGGAAGAAGAAGAAGTGAAGCTACTGGGAACTTGGACGAGCCCGTACAAAGCCAGAGTCGAGCTCGCTCTGCGACTCAAATCCATAC CTTTCCAAATCATAGAAGAAGACCTCTCCAACAAAAGCCCCCTCCTCCTCCACTCCAACCCAATCCACAAGAAAATCCCAGTCCTCATCCACAACGGAAA CCCCATTTCCGAATCCCTAATCATCCTCCACTACATCGACGAAACATGGAACAACACCCACCCGCTCCTCCCCAAAGATCCCCACGCCCGATCCACCGCC CGCTTCTGGATGAAATTCGTCGACGAAACCATTTTGCCGACGTCGTTGAAGAGCGCCAAGACGAGGGACATGGACGAGTTGGGGAAGATAATGGAGGAAC TGAATCGGTATCTGAAGCTTCTGGAGAAGGAGCTGGACGGGAAGGAATACTTCGGCGGGGAGGCGATTGGGATGCTGGACGTTGTGGTGCTGATGATGGC GTACTGGTTTGAGTTGATTCAGGAGTGTATGGGAGTCGAGCCTTCTCTGCAACTTGTGACTGAGGAAAAAGTTCCTGATCTCGTTAGGTGGATGCGGAAG CTTCTGGAAATGGATGCGGTAAAGGAAACTCTTCCTCCCAGAGAGGAACAGATGGCTCGGATTCGAGCTCTGGTCGGAGCGGGGACTTACGGTGGTGGTG CTTCTAAATGA
AA sequence Show only first row Show all	>Lus10040727 pacid=23157706 polypeptide=Lus10040727 locus=Lus10040727.g ID=Lus10040727.BGIv1.0 annot-version=v1.0 MSGEQEEEEVKLLGTWTSPYKARVELALRLKSIPFQIIEEDLSNKSPLLLHSNPIHKKIPVLIHNGNPISESLIILHYIDETWNNTHPLLPKDPHARSTA RFWMKFVDETILPTSLKSAKTRDMDELGKIMEELNRYLKLLEKELDGKEYFGGEAIGMLDVVVLMMAYWFELIQECMGVEPSLQLVTEEKVPDLVRWMRK LLEMDAVKETLPPREEQMARIRALVGAGTYGGGASK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10040727 [exp]	0	1
AT2G17350			unknown protein		Lus10026564 [exp]	9.2	0.8505
AT5G11680			unknown protein		Lus10027000 [exp]	11.4	0.8548
AT1G13570			F-box/RNI-like superfamily pro...		Lus10016297 [exp]	17.3	0.8345
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10030577 [exp]	18.9	0.7602
AT1G12855			F-box family protein (.1)		Lus10042738 [exp]	24.4	0.8188
AT1G04290			Thioesterase superfamily prote...		Lus10004288 [exp]	33.9	0.8195
AT5G06340		ATNUDX27	nudix hydrolase homolog 27 (.1...		Lus10021278 [exp]	39.2	0.8321
AT2G02230		ATPP2-B1	phloem protein 2-B1 (.1)		Lus10042713 [exp]	39.3	0.7736
AT2G27830			unknown protein		Lus10000385 [exp]	41.0	0.7707
AT1G07570		APK1A	Protein kinase superfamily pro...		Lus10000954 [exp]	51.3	0.8226

Compare expression of checked genes

Lus10040727 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.