Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07430 414 / 7e-142 HAI2 highly ABA-induced PP2C gene 2 (.1) AT2G29380 402 / 1e-138 HAI3 highly ABA-induced PP2C gene 3 (.1) AT5G59220 368 / 1e-124 SAG113, HAI1 senescence associated gene 113, highly ABA-induced PP2C gene 1 (.1) AT3G11410 352 / 2e-118 ATPP2CA, AHG3 ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA, protein phosphatase 2CA (.1) AT5G57050 258 / 5e-82 AtABI2, ABI2 ABA INSENSITIVE 2, Protein phosphatase 2C family protein (.1.2) AT5G51760 258 / 2e-81 AHG1 ABA-hypersensitive germination 1, Protein phosphatase 2C family protein (.1) AT4G26080 255 / 4e-80 AtABI1, ABI1 ABA INSENSITIVE 1, Protein phosphatase 2C family protein (.1) AT1G17550 247 / 3e-76 HAB2 homology to ABI2 (.1) AT1G72770 246 / 5e-76 HAB1 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) AT4G31750 150 / 2e-41 WIN2 HOPW1-1-interacting 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016493 [exp] 677 / 0 AT1G07430 421 / 2e-145 highly ABA-induced PP2C gene 2 (.1) Lus10040270 [exp] 367 / 4e-124 AT2G29380 390 / 1e-134 highly ABA-induced PP2C gene 3 (.1) Lus10004703 [exp] 363 / 1e-122 AT2G29380 392 / 3e-135 highly ABA-induced PP2C gene 3 (.1) Lus10026447 [exp] 248 / 5e-76 AT1G72770 465 / 1e-159 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) Lus10025000 [exp] 247 / 1e-75 AT1G72770 467 / 1e-160 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) Lus10012962 [exp] 241 / 5e-75 AT4G26080 315 / 2e-104 ABA INSENSITIVE 1, Protein phosphatase 2C family protein (.1) Lus10019017 [exp] 223 / 1e-68 AT2G29380 280 / 3e-92 highly ABA-induced PP2C gene 3 (.1) Lus10003399 [exp] 211 / 4e-65 AT2G29380 252 / 2e-82 highly ABA-induced PP2C gene 3 (.1) Lus10034965 [exp] 201 / 2e-60 AT1G72770 249 / 3e-79 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G037300 [exp] 454 / 1e-157 AT1G07430 401 / 2e-137 highly ABA-induced PP2C gene 2 (.1) Potri.001G245200 [exp] 429 / 6e-148 AT2G29380 410 / 5e-142 highly ABA-induced PP2C gene 3 (.1) Potri.008G059200 [exp] 401 / 7e-138 AT1G07430 362 / 1e-122 highly ABA-induced PP2C gene 2 (.1) Potri.010G199600 [exp] 394 / 5e-135 AT3G11410 386 / 9e-133 ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA, protein phosphatase 2CA (.1) Potri.015G133900 [exp] 276 / 9e-89 AT5G51760 338 / 1e-113 ABA-hypersensitive germination 1, Protein phosphatase 2C family protein (.1) Potri.012G131800 [exp] 259 / 2e-82 AT5G51760 332 / 3e-111 ABA-hypersensitive germination 1, Protein phosphatase 2C family protein (.1) Potri.015G018800 [exp] 254 / 6e-81 AT1G07430 236 / 2e-74 highly ABA-induced PP2C gene 2 (.1) Potri.006G224600 [exp] 250 / 4e-77 AT1G72770 503 / 1e-174 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) Potri.003G044200 [exp] 246 / 2e-75 AT1G72770 576 / 0.0 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) Potri.006G164632 [exp] 239 / 1e-74 AT4G26080 300 / 1e-98 ABA INSENSITIVE 1, Protein phosphatase 2C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10040738 pacid=23157727 polypeptide=Lus10040738 locus=Lus10040738.g ID=Lus10040738.BGIv1.0 annot-version=v1.0 ATGGCTGATATATGTTGCGGAGTTGTGACCGATAGGAAAACATCCTTGCCTTCTTCTTCTTCTTCTCCGTCGTCTTCCTCGATCTGCGAGCCTAGTTCCA GAGACGCTAGGCGGAGGAGAATGGAAATCCGCCGGTTTAAGGTCGTGCCGGGAGTGGTGGACGCCTCCTCGGAGGATGATGACGGCGATACAAAGAGGCA GAAACTCGAGGCTTACAAGGCTTCATTCTCCTGGAACAATAACGGAGGTGAAACCGCCGCTGTAGAAAATTGTGTTCCTCCGACGAATATGAGCTGCTGC GATAAAGTCAAGGAGCCGAAGGAGAAACTTGTTATGAAGGATGTGAATCCGGTGACCGGCGAGTCTCTGGAACTGTCGTTGAGCCAGTCTCTGTTGGAGG CTGAAAAGCAGCATTGTTATCCTAAATACGGCGTCGCTTCCGTCTGCGGCAGGCGGCGAGATATGGAAGATGCAGTGGCGATTCACCCTTCGTTTTGTCT TAAGAACGAGGAGGGCGTATCTGCGATGGCCGAGCTTCACTACTTCGGCGTCTACGACGGCCATGGTTGCTCTCATGTGGCGTCGAGATGTCGAGTGAGA TTACACGAGCTGCTGAAGGAGGAGCTGCGTGCGGAGTACTATAGCTCAGAGGAAGAGTCGGAGGAGTGGAAAGCGGCGATGGAGAAGAGCTTCGGCCGGA TGGACAAGGAAGTGAGTCTGTTGAATCAAGGTACGGCCGGGGCGACTTGCAGATGCGAGCTGCAGACTCCGGAATGCGACGCCGTTGGTTCCACCGCCAC CGTCGCCATCGTCTCTCCTGAAAAGATAATTGTCGCCAACTGCGGTGACTCCAGAGCCATCCTCTGCCGCAACGGGAAGCCGATCCCTCTGTCTACTGAT CATAAGCCGGATCGGCCGGATGAACTGGACCGGATCCAAGCCGCCGGCGGACGAGTGATCTATTGGGACGGACCAAGGGTGCTCGGAGTTCTCGCAATGT CGAGGGCAATCGGCGACAACTACCTGAAGCCGTACGTGATCTCGGAGCCAGAGGTGACGATAACAGAACGATCCTCCGACGACGACTGCTTGATAATCGC AAGCGACGGTCTATGGGACGTGGTGTCGAACGACACCGCGTGCGGCGTCGCGAGAATGTGTTTGAGAGGGAAAGGTAAGGGGAAGGCGGCGGGGCTGTGC GCGGCGGTAGAAGGCGAGGGATCGGCGGAGGAAGAAGAAAAGAACGGACGGTCGGGATGGGCGGAGAAGTCGGATAGAGCCTGCTCAGATGCGTCGATGC TGCTAACGAAGCTGGCGCTGGCGAGGCACAGTACCGATAACGTGAGCGTTGTGGTGGTGGACCTCAGACGTGACACGTAG
AA sequence Show only first row Show all	>Lus10040738 pacid=23157727 polypeptide=Lus10040738 locus=Lus10040738.g ID=Lus10040738.BGIv1.0 annot-version=v1.0 MADICCGVVTDRKTSLPSSSSSPSSSSICEPSSRDARRRRMEIRRFKVVPGVVDASSEDDDGDTKRQKLEAYKASFSWNNNGGETAAVENCVPPTNMSCC DKVKEPKEKLVMKDVNPVTGESLELSLSQSLLEAEKQHCYPKYGVASVCGRRRDMEDAVAIHPSFCLKNEEGVSAMAELHYFGVYDGHGCSHVASRCRVR LHELLKEELRAEYYSSEEESEEWKAAMEKSFGRMDKEVSLLNQGTAGATCRCELQTPECDAVGSTATVAIVSPEKIIVANCGDSRAILCRNGKPIPLSTD HKPDRPDELDRIQAAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTITERSSDDDCLIIASDGLWDVVSNDTACGVARMCLRGKGKGKAAGLC AAVEGEGSAEEEEKNGRSGWAEKSDRACSDASMLLTKLALARHSTDNVSVVVVDLRRDT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07430		HAI2	highly ABA-induced PP2C gene 2...		Lus10040738 [exp]	0	1
AT2G45750			S-adenosyl-L-methionine-depend...		Lus10027432 [exp]	2.2	0.7255
AT3G01180		ATSS2	starch synthase 2 (.1)		Lus10033014 [exp]	6.3	0.7455
AT5G66430			S-adenosyl-L-methionine-depend...		Lus10036547 [exp]	8.8	0.7844
AT1G66170		MMD1	MALE MEIOCYTE DEATH 1, RING/FY...		Lus10010966 [exp]	9.6	0.6644
AT3G60730			Plant invertase/pectin methyle...		Lus10028536 [exp]	15.5	0.6835
AT1G11790		AtADT1, ADT1	Arabidopsis thaliana arogenate...		Lus10031547 [exp]	20.6	0.6766
AT1G64380	AP2_ERF		Integrase-type DNA-binding sup...		Lus10003889 [exp]	23.8	0.7515
AT1G08790			Protein of unknown function (D...		Lus10006560 [exp]	24.1	0.7511
AT4G36950		MAPKKK21	mitogen-activated protein kina...		Lus10031339 [exp]	28.0	0.6532
					Lus10012564 [exp]	31.5	0.7110

Compare expression of checked genes

Lus10040738 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.