Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29390 455 / 4e-164 ATSMO2-2, SMO2-2, ATSMO2, SMO2-1 Arabidopsis thaliana sterol 4-alpha-methyl-oxidase 2-2, sterol 4-alpha-methyl-oxidase 2-2 (.1.2.3.4.5) AT1G07420 454 / 2e-163 SMO2-1, ATSMO1, ATSMO2-2, SMO2-2 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) AT4G12110 227 / 1e-73 ATSMO1-1, SMO1-1 sterol-4alpha-methyl oxidase 1-1 (.1) AT4G22753 215 / 6e-69 ATSMO1-3, ATSMO1, SMO1-3 sterol 4-alpha methyl oxidase 1-3 (.1.2) AT4G22756 215 / 7e-69 ATSMO1-2, ATSMO1, SMO1-2 sterol C4-methyl oxidase 1-2 (.1) AT1G69640 63 / 2e-11 SBH1 sphingoid base hydroxylase 1 (.1) AT1G14290 59 / 3e-10 SBH2 sphingoid base hydroxylase 2 (.1) AT3G02590 58 / 1e-09 Fatty acid hydroxylase superfamily protein (.1) AT3G02580 53 / 5e-08 BUL1, DWF7, STE1 DWARF 7, BOULE 1, sterol 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016492 [exp] 545 / 0 AT1G07420 463 / 3e-167 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) Lus10001556 [exp] 457 / 1e-164 AT1G07420 458 / 3e-165 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) Lus10004321 [exp] 220 / 3e-71 AT4G12110 422 / 2e-150 sterol-4alpha-methyl oxidase 1-1 (.1) Lus10004988 [exp] 214 / 2e-70 AT1G07420 206 / 5e-68 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) Lus10032193 [exp] 217 / 1e-69 AT4G12110 483 / 4e-174 sterol-4alpha-methyl oxidase 1-1 (.1) Lus10004324 [exp] 197 / 2e-62 AT4G22756 345 / 3e-120 sterol C4-methyl oxidase 1-2 (.1) Lus10024555 [exp] 191 / 8e-60 AT4G12110 442 / 1e-158 sterol-4alpha-methyl oxidase 1-1 (.1) Lus10004322 [exp] 187 / 5e-58 AT4G12110 357 / 2e-124 sterol-4alpha-methyl oxidase 1-1 (.1) Lus10028908 [exp] 178 / 2e-54 AT4G22756 288 / 2e-97 sterol C4-methyl oxidase 1-2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G245300 [exp] 473 / 6e-171 AT1G07420 476 / 2e-172 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) Potri.009G037400 [exp] 472 / 1e-170 AT1G07420 470 / 5e-170 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) Potri.001G116500 [exp] 226 / 3e-73 AT4G12110 439 / 1e-156 sterol-4alpha-methyl oxidase 1-1 (.1) Potri.003G116000 [exp] 223 / 4e-72 AT4G12110 448 / 3e-160 sterol-4alpha-methyl oxidase 1-1 (.1) Potri.014G069500 [exp] 204 / 8e-65 AT4G12110 403 / 2e-142 sterol-4alpha-methyl oxidase 1-1 (.1) Potri.002G061400 [exp] 61 / 6e-11 AT1G69640 311 / 1e-107 sphingoid base hydroxylase 1 (.1) Potri.005G200000 [exp] 59 / 3e-10 AT1G69640 315 / 7e-109 sphingoid base hydroxylase 1 (.1) Potri.005G199901 [exp] 48 / 5e-07 AT1G69640 207 / 2e-68 sphingoid base hydroxylase 1 (.1) Potri.017G116600 [exp] 49 / 1e-06 AT3G02580 455 / 1e-163 DWARF 7, BOULE 1, sterol 1 (.1) Potri.004G097500 [exp] 49 / 2e-06 AT3G02580 464 / 3e-167 DWARF 7, BOULE 1, sterol 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04116 [flax] [poplar] FA_hydroxylase Fatty acid hydroxylase superfamily
Representative CDS sequence Show only first row Show all	>Lus10040739 pacid=23157565 polypeptide=Lus10040739 locus=Lus10040739.g ID=Lus10040739.BGIv1.0 annot-version=v1.0 ATGCAGTTTCTGATCACACATTTCAGCGATTTTCAATTGGCTTGTCTCGGGAGTTTCTTCATCCATGAAAGCGTCTTCTTTTTATCTGGACTTCCTTACA TATTCCTTGAGAGAGCAGGGTGGCTGAGCAAGTACAAAATTCAGCATAAAAGCAACAGTCCAGCAGCTCAGGAGAAATGTATTACGCGTCTACTTTTGTA TCACTTTGGTGTCAATCTGCCAGTTATGATTTTTTCCTATCCTGTCTTCAAGCATATGGGAATGAAAAGCAGCCTTCCATTGCCGTCATGGAGAGTAGTT CTCAGCCAAATAATTTTCTACTTCATTTTGGAAGACTTTGTGTTCTATTGGGGACATCGAATTTTGCATACAAAATGGCTGTACAAGCATGTGCATAGTG TCCATCACGAGTATGCTACTCCATTTGGACTAACATCTGAATATGCTCACCCTGCTGAGATATTGTTCCTTGGATTCGCTACTATTATTGGTCCTGCTAT TACTGGCCCACATCTATCTACATTGTGGTTATGGATGGTGCTTAGAGTTCTGGAAACAGTTGAAGCGCATTCAGGTTACCATTTTCCATGGAGCCCGTCT AATTTTCTTCCTGTATATGGAGGTGCTGATTTTCATGATTATCACCACCGCTTGCTGTACACTAAATCAGGAAACTACTCGTCAACTTTCACATACATGG ACTGGATATTTGGCACCGACAAAGGTTACCGAAAGTTGAAGGCATTGAAGAGCGATGAGAATGGACACAAGAGCGATGAGAATGGGCACATAAGCAACAA CAAGGTGCAATGA
AA sequence Show only first row Show all	>Lus10040739 pacid=23157565 polypeptide=Lus10040739 locus=Lus10040739.g ID=Lus10040739.BGIv1.0 annot-version=v1.0 MQFLITHFSDFQLACLGSFFIHESVFFLSGLPYIFLERAGWLSKYKIQHKSNSPAAQEKCITRLLLYHFGVNLPVMIFSYPVFKHMGMKSSLPLPSWRVV LSQIIFYFILEDFVFYWGHRILHTKWLYKHVHSVHHEYATPFGLTSEYAHPAEILFLGFATIIGPAITGPHLSTLWLWMVLRVLETVEAHSGYHFPWSPS NFLPVYGGADFHDYHHRLLYTKSGNYSSTFTYMDWIFGTDKGYRKLKALKSDENGHKSDENGHISNNKVQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29390		ATSMO2-2, SMO2-...	Arabidopsis thaliana sterol 4-...		Lus10040739 [exp]	0	1
AT1G47740			PPPDE putative thiol peptidase...		Lus10040485 [exp]	1.4	0.9208
AT1G26355		SP1L1	SPIRAL1-like1 (.1)		Lus10034675 [exp]	2.8	0.8830
					Lus10019304 [exp]	4.2	0.9111
AT3G05100			S-adenosyl-L-methionine-depend...		Lus10019000 [exp]	5.5	0.8495
AT3G63470		SCPL40	serine carboxypeptidase-like 4...		Lus10005327 [exp]	10.2	0.8988
AT2G45790		ATPMM	phosphomannomutase (.1)		Lus10040934 [exp]	10.4	0.8210
AT1G19440		KCS4	3-ketoacyl-CoA synthase 4 (.1)		Lus10026345 [exp]	11.2	0.8754
AT2G44740		CYCP4;1	cyclin p4;1 (.1)		Lus10032505 [exp]	12.0	0.8910
AT1G12240		ATBETAFRUCT4, V...	VACUOLAR INVERTASE, Glycosyl h...		Lus10028922 [exp]	13.0	0.8665
AT1G35780			unknown protein		Lus10020921 [exp]	14.1	0.8606

Compare expression of checked genes

Lus10040739 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.