Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59210 462 / 4e-160 myosin heavy chain-related (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016491 [exp] 747 / 0 AT5G59210 518 / 0.0 myosin heavy chain-related (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G245500 [exp] 504 / 2e-176 AT5G59210 525 / 0.0 myosin heavy chain-related (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040740 pacid=23157878 polypeptide=Lus10040740 locus=Lus10040740.g ID=Lus10040740.BGIv1.0 annot-version=v1.0 ATGAACTATCGGACGAAGAGTGCTCAGAGCTGGACGGTGGGCCTCGAACTAGCCCAAATTTATCTGTTGATTCCCGGAAGCCCATTGAAAGTAGGTTGTC TTCCCAATTTCAAACCGCTTCTTTCCTGCGGAGAAAACTGGATTCGAAGCTGTGGAAAGGGTGAAGGAAAGAGATCAATCCTCCGCCCATTTGCGATTCT CTCTGCTATGGACTCACGTCATGCAACTCTTGGTCGACGAACTCTGGAAGAGATTCGTCAAAAGAGAGCGGCAGAGAGATTGAGCAAAACATCTTCTGGA CCAGATCTCGGCAGCCCTTCAATCCTTGCAGATACTGTTGGGATAAAGAAATCAGAGAGTGCAAATCGACTCTCAGAGGCTGATGTTAGTGGTGTAGTGG CGCAGCTTCAAGAGCTGCAGAGAAAGAATTTGGATTTAGAGGAAAACACCGGGTTATTGTCTTCGAAGCTTCAAGCGAAGACGACGGAGAATGAGACATT ACAAAATCGAGTAAATGAGCTGGAACGGAGCACTGTTCCATCTTTAAGGAAAGCCCTGAAGGATGTAGCAATGGAAAAAGATGCAGCAGTTGTTGCAAAG GAGGACCTTTCAGCCCAGCTTCGTACACTTAAGAAACGGCTAAAGGATGCAGAAGAGGAACAATATCGAGCCGAGGAAGATGCTGCAGCAATGCGAGCAG AACTGAACTCTATACAGAGGCAAGCAATGAGTAATAGCCTAAACGGTATTACTTCTATGGGTATTTCAGCGGAGCAGTTTCAAAGCTTGGAAAAGGAGTT GGCTAGTGTGAAGTCTGACCTGCAGCAAGAATCTTTTATGAGGCAACGGGAGCAGCAACAGTTACTCGAGGAGAAAGTCAAGGTTTCTGCCTTTGAGGCT GAAAGGCAGCAGCTGGAAGAAAAACTCCTTTCTCTGTCCCAAAAGGCACCAGAACAAGTAGTAGAAAAAGTTGCTCAGAATGGACTTTCAATGGAGGATA AAGAGATACTTGAGAAGCAGTTGCATGACATGGCTGTTGCAGTAGAGAGATTGGAAAGTAGTAGGCAGAAACTACTGAAGGAGATTGATTCTCAATCTGC AGAGATAGAGCAGCTTTTTGAGGAAAATTCCCACCTTGTTTCCTCGTGTCAAGACGCAATGAACAGAGCAAATCAATGGGAGAACCAGTTAAAGGAATGT CTCAAGAAGAATGAAGAACTCCGCACAATGCTCAACAAATTGTGTACAGAACAAGCAGCTGTACCATCTTACAACGAAACACTTCAAGGCTCAAAGGAAT CTGAGAGCGATAGCTTAAATGCACAAGGACATACACCTGAGGCTCTCTCCCTTAAGGGAGAGCTCGTAAAAGAACAAAGCAGAGCAGTAGCATTATCGGC AGAGGTAATGCAGCTATCGGCAAAGCTCCAGCAGGCTACACAAGCATACAATAGTCTCGTACATGCCTATAGACCAGCGCTTCGGAACATCGAGAGCAGT CTGATCAAAATGAAGCAGGACAGCTCTATGACAGTTCAGTGA
AA sequence Show only first row Show all	>Lus10040740 pacid=23157878 polypeptide=Lus10040740 locus=Lus10040740.g ID=Lus10040740.BGIv1.0 annot-version=v1.0 MNYRTKSAQSWTVGLELAQIYLLIPGSPLKVGCLPNFKPLLSCGENWIRSCGKGEGKRSILRPFAILSAMDSRHATLGRRTLEEIRQKRAAERLSKTSSG PDLGSPSILADTVGIKKSESANRLSEADVSGVVAQLQELQRKNLDLEENTGLLSSKLQAKTTENETLQNRVNELERSTVPSLRKALKDVAMEKDAAVVAK EDLSAQLRTLKKRLKDAEEEQYRAEEDAAAMRAELNSIQRQAMSNSLNGITSMGISAEQFQSLEKELASVKSDLQQESFMRQREQQQLLEEKVKVSAFEA ERQQLEEKLLSLSQKAPEQVVEKVAQNGLSMEDKEILEKQLHDMAVAVERLESSRQKLLKEIDSQSAEIEQLFEENSHLVSSCQDAMNRANQWENQLKEC LKKNEELRTMLNKLCTEQAAVPSYNETLQGSKESESDSLNAQGHTPEALSLKGELVKEQSRAVALSAEVMQLSAKLQQATQAYNSLVHAYRPALRNIESS LIKMKQDSSMTVQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59210			myosin heavy chain-related (.1...		Lus10040740 [exp]	0	1
AT4G20930			6-phosphogluconate dehydrogena...		Lus10038545 [exp]	7.4	0.8556
AT5G12320			ankyrin repeat family protein ...		Lus10009696 [exp]	7.7	0.8619
AT5G16800			Acyl-CoA N-acyltransferases (N...		Lus10013457 [exp]	8.4	0.8691
AT1G55510		BCDH BETA1, BCD...	branched-chain alpha-keto acid...		Lus10010324 [exp]	12.5	0.8603
AT2G21470		EMB2764, ATSAE2...	EMBRYO DEFECTIVE 2764, SUMO-ac...		Lus10028804 [exp]	13.0	0.8527
AT5G08430			SWIB/MDM2 domain;Plus-3;GYF (....		Lus10020897 [exp]	16.8	0.8618
AT4G08310			unknown protein		Lus10003736 [exp]	21.6	0.8470
AT2G11000		ATMAK10	MAK10 homologue (.1.2)		Lus10005185 [exp]	26.6	0.8460
AT4G30900			DNAse I-like superfamily prote...		Lus10022154 [exp]	27.9	0.8239
AT5G03345			unknown protein		Lus10026529 [exp]	29.1	0.8478

Compare expression of checked genes

Lus10040740 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.