Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016490 [exp] 182 / 3e-50 AT3G22142 150 / 3e-37 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040741 pacid=23157940 polypeptide=Lus10040741 locus=Lus10040741.g ID=Lus10040741.BGIv1.0 annot-version=v1.0 ATGCGGACTATTGCACATTGCGTCCTTGTTTTGGTGCTATGGGTGACGGCATTTCAAGCTGATGTTATTGTGTTGTCTGTTGCTCGTCTCAACGAACGTG AGTTTGGAGGAGTGAAAGTTGTTCGTGATCCTACTCTACCATCCAACGGATATACTCCACCTTTGCAAAGGCCTCCGACCCAAACTCAGCCATCCGGTGG GTATACTCCACCCTCTCAGAGTCCACCGATGCAAACGCCGCCTGTTCATGGGTACACTCCGCCATTTCAAAGTCCACCGATCCAGACGCCACCATCTCAT GGGTACAGTCCACCATCACAAAGCCCCCCGATAGTAACACCGCCATCCCATGGGTATACTTCACCTTTTCAAAACCCTCCAGTCCAAACTCCACCATCAC ATGGCTACACTCCACCCACCCAAAGCCCACCGGTGCAAACTCCACCATCACATGGCTATACTCCACCTTCTCAAAGCCCTCCGATCCATACAGCACCGGC GCATGGGTACACCCCTCCCTTCCAAAGCCCTCCGATCCAAACTCCACCTTCTCATGGTTATACTCCACCCTCTCACAACCCTCCTACACAAACGCCTCCA TTTCATGGTTATACTCCTCCCTCGCAGAGCCCGCCAACACACGGGTACACACCACCATCGCAGAGCCCTCCAGTCCAAACTCCTCCTTCTCATGGCTACA CTCCACCATCGCAAAGCCCTCCAGTCCCGACGCCACCATCGCATGGGTACACTCCTCCCTCCCAAAGCCCTCCATCACAAACCCCGCCATTCCATGGCTA CACGCCTCCCTTCCATAGCCCTCCTACACAAACACCACCATCCCATGGGTACACTCCCCCTTCCCAGAACCCTCCGGCCCAGACGCCACCATCTCATAGG TACACTCCACCATCACAGAGTCCTCCGACAATAACACCGCCATCTCATGGCCCACCGATCCAAACTCCACCATCACATAGTTATACTCCACCTTCTCAAA GCCCTCCAGTCTTGACACCACCGTCACATGGGTATACTCCTCCCTCTCAGAGCCCTCCGGTCCAAACTCCACCTTCCCATGGCTATACTCCACCCTCTCA AAGCCCTCCAACCCAAACACCTTCATCTGATGGGTACACTCCTCCTTCCCAAAGTCCCCCGACCCAAACACCGCCATCTCATGGGTATACACCACCTTCA CATAGCCCACCAGTTCAAACACCACCATCTCGTGGATACACTCCACCTTCGCAAACCCCTCCGGTCCAAACTCCTCCCTCTCAAAGCCCTCCAACACAAA CCCCACCATCTCATGGTTACACGCCACCTTCTCAAAGCCCTCCGACTCAAACGCCCCCTTCTCATGGTTACACGCCTCCCTCCCAGAGTCCCTCCCAGAA GTGA
AA sequence Show only first row Show all	>Lus10040741 pacid=23157940 polypeptide=Lus10040741 locus=Lus10040741.g ID=Lus10040741.BGIv1.0 annot-version=v1.0 MRTIAHCVLVLVLWVTAFQADVIVLSVARLNEREFGGVKVVRDPTLPSNGYTPPLQRPPTQTQPSGGYTPPSQSPPMQTPPVHGYTPPFQSPPIQTPPSH GYSPPSQSPPIVTPPSHGYTSPFQNPPVQTPPSHGYTPPTQSPPVQTPPSHGYTPPSQSPPIHTAPAHGYTPPFQSPPIQTPPSHGYTPPSHNPPTQTPP FHGYTPPSQSPPTHGYTPPSQSPPVQTPPSHGYTPPSQSPPVPTPPSHGYTPPSQSPPSQTPPFHGYTPPFHSPPTQTPPSHGYTPPSQNPPAQTPPSHR YTPPSQSPPTITPPSHGPPIQTPPSHSYTPPSQSPPVLTPPSHGYTPPSQSPPVQTPPSHGYTPPSQSPPTQTPSSDGYTPPSQSPPTQTPPSHGYTPPS HSPPVQTPPSRGYTPPSQTPPVQTPPSQSPPTQTPPSHGYTPPSQSPPTQTPPSHGYTPPSQSPSQK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22142			Bifunctional inhibitor/lipid-t...		Lus10040741 [exp]	0	1
AT3G48810			Pentatricopeptide repeat (PPR)...		Lus10009661 [exp]	1.4	0.7169
AT4G19020		CMT2	chromomethylase 2 (.1)		Lus10016308 [exp]	6.9	0.7274
AT4G34850		LAP5	LESS ADHESIVE POLLEN 5, Chalco...		Lus10042388 [exp]	9.4	0.7002
AT3G02645			Plant protein of unknown funct...		Lus10015084 [exp]	10.7	0.7133
AT4G35890			winged-helix DNA-binding trans...		Lus10025952 [exp]	24.2	0.6419
AT1G68390			Core-2/I-branching beta-1,6-N-...		Lus10035828 [exp]	26.3	0.6719
AT1G68800	TCP	TCP12, BRC2, TC...	BRANCHED 2, TCP domain protein...		Lus10035055 [exp]	42.8	0.6980
AT5G10050			NAD(P)-binding Rossmann-fold s...		Lus10019683 [exp]	45.6	0.6321
AT1G13960	WRKY	WRKY4	WRKY DNA-binding protein 4 (.1...		Lus10012029 [exp]	58.8	0.5514
AT2G31420	B3		Domain of unknown function (DU...		Lus10009354 [exp]	62.9	0.6375

Compare expression of checked genes

Lus10040741 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.