Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59160 467 / 5e-167 PPO, TOPP2 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) AT3G46820 455 / 2e-162 TOPP5 type one serine/threonine protein phosphatase 5 (.1) AT2G29400 455 / 2e-162 PP1-AT, TOPP1 type one protein phosphatase 1 (.1) AT2G39840 451 / 8e-161 TOPP4 type one serine/threonine protein phosphatase 4 (.1) AT1G64040 424 / 4e-150 TOPP3 type one serine/threonine protein phosphatase 3 (.1) AT4G11240 419 / 4e-148 TOPP7 Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT5G43380 416 / 2e-146 TOPP6 type one serine/threonine protein phosphatase 6 (.1.2.3) AT5G27840 402 / 2e-141 TOPP8 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2) AT3G05580 394 / 2e-138 TOPP9 type one protein phosphatase 9, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT2G42500 253 / 5e-83 PP2A-3, PP2A-4 protein phosphatase 2A-3 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016489 [exp] 534 / 0 AT5G59160 570 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Lus10004989 [exp] 501 / 1e-180 AT5G59160 565 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Lus10040259 [exp] 465 / 4e-166 AT2G39840 590 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10004692 [exp] 465 / 5e-166 AT2G39840 596 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10030163 [exp] 456 / 8e-163 AT2G39840 602 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10001025 [exp] 456 / 1e-162 AT2G39840 602 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10022019 [exp] 456 / 3e-161 AT2G39840 565 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10042559 [exp] 452 / 1e-160 AT2G39840 564 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10021872 [exp] 409 / 7e-144 AT2G39840 523 / 0.0 type one serine/threonine protein phosphatase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G037700 [exp] 482 / 7e-173 AT5G59160 553 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Potri.001G245700 [exp] 473 / 2e-169 AT2G29400 556 / 0.0 type one protein phosphatase 1 (.1) Potri.008G060800 [exp] 462 / 5e-165 AT2G39840 594 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.010G197600 [exp] 460 / 3e-164 AT2G39840 602 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.013G045900 [exp] 454 / 2e-161 AT2G39840 564 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.019G018000 [exp] 447 / 4e-159 AT2G39840 554 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.008G166300 [exp] 433 / 3e-153 AT2G39840 545 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.001G098600 [exp] 432 / 3e-153 AT4G11240 582 / 0.0 Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Potri.016G142700 [exp] 404 / 4e-142 AT2G39840 493 / 1e-177 type one serine/threonine protein phosphatase 4 (.1) Potri.005G024100 [exp] 397 / 1e-139 AT5G27840 553 / 0.0 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10040742 pacid=23157638 polypeptide=Lus10040742 locus=Lus10040742.g ID=Lus10040742.BGIv1.0 annot-version=v1.0 ATGGCTCAACAAGGGCAGGCTTCCATGGACCCTACAGTTCTGGACGACATAATCAACCGTCTGTTGGAATTTAAGCAAACGAGGTCCGCTAAGCAGCAGC AAGTCCAGCTGAGTGAGAGCGAGATCCGCCAGCTCTGTACTGTGTCCAGAGAAATCTTCCTTCAACAGCCCAATCTTCTGGAGCTCGAGGCACCTATTAA GATCTGCGGTGACATTCATGGCCAGTATTCTGATCTTTTGAGGCTTTTTGAGTATGGTGGCTATCCTCCCAGTGCCAATTATTTGTTCCTAGGGGATTAT GTTGATCGTGGAAAGCAGAGTCTAGAAACAATTTGTCTTTTGCTTGCCTACAAAATCAAGTACCCCGAGAACTTCTTTCTCTTAAGAGGAAACCATGAAT CTGCATCTATTAATCGAATTTACGGATTCTATGACGAGTGCAAGCGCCGGTTCAATGTTAGGCTTTGGAAAACTTTCACCGACTGTTTTAATTGTCTACC GGTTGCTGGTCTGATAGATGACAAAATACTGTGCATGCACGGAGGTCTTTCTCCTGATTTAACAAGCCTAGATGAGATAAGGAATCTGTCCCGTCCAGCT GATGTTCCTGATGCTGGTTTACTATGTGATCTACTTTGGTCTGATCCTGGAAAGGACGTTAAAGGATGGGGAATGAATGACCGTGGGGTCTCCTACACCT TTGGGCCAGATAAGGTGTCAGAATTCTTAATGAAGAATGATATGGACCTAATTTGTCGTGCTCATCAGGCATTAGCTTGGATGGCTAATAGGGATTTGGA GACATTCTTATGTATTCTGTTCGAAACCTGGTTGCAGAACCTTTCCAGCTGTGATATGAAGAGAAACATGCCGGAGGATCTGATGCTGCAGACGAAAAGG CGCCTGCTTAGCAATCGGGATGCTGTTTGTGTTTCTCAAACCAATGGAGGGTTAGAAGATACTGAGCGTTGA
AA sequence Show only first row Show all	>Lus10040742 pacid=23157638 polypeptide=Lus10040742 locus=Lus10040742.g ID=Lus10040742.BGIv1.0 annot-version=v1.0 MAQQGQASMDPTVLDDIINRLLEFKQTRSAKQQQVQLSESEIRQLCTVSREIFLQQPNLLELEAPIKICGDIHGQYSDLLRLFEYGGYPPSANYLFLGDY VDRGKQSLETICLLLAYKIKYPENFFLLRGNHESASINRIYGFYDECKRRFNVRLWKTFTDCFNCLPVAGLIDDKILCMHGGLSPDLTSLDEIRNLSRPA DVPDAGLLCDLLWSDPGKDVKGWGMNDRGVSYTFGPDKVSEFLMKNDMDLICRAHQALAWMANRDLETFLCILFETWLQNLSSCDMKRNMPEDLMLQTKR RLLSNRDAVCVSQTNGGLEDTER

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59160		PPO, TOPP2	PROTOPORPHYRINOGEN OXIDASE, ty...		Lus10040742 [exp]	0	1
AT1G09870			histidine acid phosphatase fam...		Lus10040951 [exp]	2.8	0.8633
AT3G07140			GPI transamidase component Gpi...		Lus10025918 [exp]	4.1	0.8865
AT5G38690			Zinc-finger domain of monoamin...		Lus10033539 [exp]	5.3	0.8757
AT4G03430		EMB2770, STA1	STABILIZED 1, EMBRYO DEFECTIVE...		Lus10018580 [exp]	6.7	0.8554
AT1G45000			AAA-type ATPase family protein...		Lus10028807 [exp]	7.4	0.7933
AT1G73450			Protein kinase superfamily pro...		Lus10042297 [exp]	10.2	0.8754
AT4G23950			Galactose-binding protein (.1....		Lus10023065 [exp]	10.3	0.7757
AT4G04860		DER2.2	DERLIN-2.2 (.1)		Lus10007664 [exp]	14.1	0.8228
AT5G18950			Tetratricopeptide repeat (TPR)...		Lus10024666 [exp]	19.2	0.8001
AT5G05520			Outer membrane OMP85 family pr...		Lus10009835 [exp]	20.2	0.8380

Compare expression of checked genes

Lus10040742 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.