Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16810 427 / 9e-148 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016488 [exp] 637 / 0 AT5G16810 504 / 1e-178 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G050500 [exp] 477 / 1e-167 AT5G16810 544 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10040743 pacid=23157704 polypeptide=Lus10040743 locus=Lus10040743.g ID=Lus10040743.BGIv1.0 annot-version=v1.0 ATGTTTGCTGCGACGGCAGCCACAGTTGCTGCAGCTGAACTCACTGCTTTCTGCAGTTGTAATTACAAGTTCTCTGCGTCATCTGCTAAAAATCGATGGA AATGTCGATCCAGTCTAATTACCAGCTCGTCATCGTTCGAAGTAGGCGCACTCATCGGAAGTTACGGCTTCATGAACGTTACCAGTTATTCAGGAGGTGG CAGTTTGAGCTATTCGTCGACTGATCTGGAAAATATGAAAGTTCAAGATGTAGGGGAAGGCAATGTGAAGATTAAGGTTTATGAAGGAAGAGTAGCTGAG GGCAAACTTAGGGGAACTCCTATTTTGTTTAAGGTTTATCCAGGCCAAAGGGCTGGTGGTATCGAGGCTGATATGATGGCTGCAAATGAGCTCAATGCTC ACACTTCACTTCAGAGCACTCCAGAAGGTATATGTCGGAATCTAGTGGTTCTACTGGGAGGATTCGAAACAAAAACTGGGGAACAGTGGCTTGCTTTTCG TAATGATGGAAAATACAGTGCAGCGGATTACACAGCATTGGTCAGCAAGAGAATATCAGAGAGTTCTTCAAAGAAAGAAGAGTCTTGGAACAGTTTTCAA AAGGAAAAGGACATGGAGCATCGGAGATATTATATTATCAGGATGTTTCAAAGTGTTATTCGCGGTCTAGCATTTATGCATGACCATGACAGATTGCACC AGAGTCTTGGACCCTCTTCTGTTCTGCTCAATACCATTGTCGAAAAAGATGCAGCTTACCTGATTCCAAGACTTCGGGACTTGTCTTTTTCTGTTGATAT GAGTTTGGAAAATATTCCACAACAAGATGAAGCTGGAACACTCTCAGAAGGTCTTTGGAGAAGGGCAACAACCGCTGGTGCCTACTCCACTTTGGAGAAA CGTGCCTTTGGAATTGCTGATGACATATATGCTGCAGGTCTTCTTTTAGCATACTTGGCTTTTGTTCCCTTCAGTGAAGCAGGCATCGTGGATAGCCTCT CCTTGCAGGTAGCTATAAACAACTACATCTTCTTCCTCAAGGTAGCTTCATTTGTTCCTCAGCATACAAAGTCTCTAAGTACTTGGCCAACGTCAATTAC TCTGCAGAGGCTATTAGAGAATACATTTCGACTCGATCTTGAAGCTACAAGAGAGTACTGTTTAGCTGATGATCGATTGGAAGATGCTGTCAAGTTTTTG GATCTAGGTGATCAGTCCGGTTGGAAACTACTTCAGGCAATGTTGAATCCAGATTTTCGGCAGAGACCAACTGCAGAAGCTGTGCTCAACCACTCTTTTC TAAGTACCTCTCTTCGTTAG
AA sequence Show only first row Show all	>Lus10040743 pacid=23157704 polypeptide=Lus10040743 locus=Lus10040743.g ID=Lus10040743.BGIv1.0 annot-version=v1.0 MFAATAATVAAAELTAFCSCNYKFSASSAKNRWKCRSSLITSSSSFEVGALIGSYGFMNVTSYSGGGSLSYSSTDLENMKVQDVGEGNVKIKVYEGRVAE GKLRGTPILFKVYPGQRAGGIEADMMAANELNAHTSLQSTPEGICRNLVVLLGGFETKTGEQWLAFRNDGKYSAADYTALVSKRISESSSKKEESWNSFQ KEKDMEHRRYYIIRMFQSVIRGLAFMHDHDRLHQSLGPSSVLLNTIVEKDAAYLIPRLRDLSFSVDMSLENIPQQDEAGTLSEGLWRRATTAGAYSTLEK RAFGIADDIYAAGLLLAYLAFVPFSEAGIVDSLSLQVAINNYIFFLKVASFVPQHTKSLSTWPTSITLQRLLENTFRLDLEATREYCLADDRLEDAVKFL DLGDQSGWKLLQAMLNPDFRQRPTAEAVLNHSFLSTSLR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16810			Protein kinase superfamily pro...		Lus10040743 [exp]	0	1
AT1G04620		HCAR	7-hydroxymethyl chlorophyll a ...		Lus10043143 [exp]	1.0	0.9765
AT5G39830		DEG8, DEGP8	DEG PROTEASE 8, Trypsin family...		Lus10007262 [exp]	2.8	0.9635
AT5G44600			S-adenosyl-L-methionine-depend...		Lus10038404 [exp]	4.9	0.9624
AT2G33180			unknown protein		Lus10023686 [exp]	6.3	0.9532
AT5G56850			unknown protein		Lus10008560 [exp]	7.9	0.9374
AT3G47650			DnaJ/Hsp40 cysteine-rich domai...		Lus10005719 [exp]	8.7	0.9623
AT5G61410		RPE, EMB2728	EMBRYO DEFECTIVE 2728, D-ribul...		Lus10019082 [exp]	8.8	0.9206
AT5G16810			Protein kinase superfamily pro...		Lus10016488 [exp]	9.5	0.9382
AT3G60370			FKBP-like peptidyl-prolyl cis-...		Lus10042897 [exp]	9.7	0.9605
AT5G48830			unknown protein		Lus10038165 [exp]	10.6	0.9414

Compare expression of checked genes

Lus10040743 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.