Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29410 318 / 1e-106 ATMTPB1, MTPB1 metal tolerance protein B1 (.1) AT3G58810 271 / 1e-87 ATMTPA2, MTP3, MTPA2, ATMTP3 ARABIDOPSIS METAL TOLERANCE PROTEIN 3, metal tolerance protein A2 (.1.2) AT3G61940 263 / 2e-85 ATMTPA1, MTPA1 Cation efflux family protein (.1) AT2G46800 167 / 9e-48 ATMTP1, ZAT1, ZAT, ATCDF1 ZINC TRANSPORTER OF ARABIDOPSIS THALIANA 1, A. THALIANA CATION DIFFUSION FACILITATOR 1, zinc transporter of Arabidopsis thaliana (.1.2) AT2G04620 56 / 4e-08 Cation efflux family protein (.1) AT3G12100 45 / 7e-05 Cation efflux family protein (.1.2) AT1G33020 42 / 0.0005 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016487 [exp] 637 / 0 AT2G29410 345 / 8e-117 metal tolerance protein B1 (.1) Lus10002674 [exp] 279 / 7e-91 AT3G58810 503 / 5e-179 ARABIDOPSIS METAL TOLERANCE PROTEIN 3, metal tolerance protein A2 (.1.2) Lus10012604 [exp] 165 / 7e-47 AT3G61940 500 / 2e-177 Cation efflux family protein (.1) Lus10030192 [exp] 107 / 4e-28 AT2G46800 221 / 1e-72 ZINC TRANSPORTER OF ARABIDOPSIS THALIANA 1, A. THALIANA CATION DIFFUSION FACILITATOR 1, zinc transporter of Arabidopsis thaliana (.1.2) Lus10004102 [exp] 61 / 1e-09 AT2G04620 784 / 0.0 Cation efflux family protein (.1) Lus10013358 [exp] 59 / 5e-09 AT2G04620 783 / 0.0 Cation efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G245800 [exp] 392 / 1e-135 AT2G29410 336 / 7e-114 metal tolerance protein B1 (.1) Potri.014G106200 [exp] 283 / 2e-92 AT2G46800 277 / 4e-90 ZINC TRANSPORTER OF ARABIDOPSIS THALIANA 1, A. THALIANA CATION DIFFUSION FACILITATOR 1, zinc transporter of Arabidopsis thaliana (.1.2) Potri.002G180100 [exp] 276 / 1e-89 AT2G46800 502 / 3e-178 ZINC TRANSPORTER OF ARABIDOPSIS THALIANA 1, A. THALIANA CATION DIFFUSION FACILITATOR 1, zinc transporter of Arabidopsis thaliana (.1.2) Potri.011G150600 [exp] 167 / 1e-47 AT3G58810 281 / 2e-91 ARABIDOPSIS METAL TOLERANCE PROTEIN 3, metal tolerance protein A2 (.1.2) Potri.001G450900 [exp] 164 / 2e-46 AT2G46800 285 / 3e-92 ZINC TRANSPORTER OF ARABIDOPSIS THALIANA 1, A. THALIANA CATION DIFFUSION FACILITATOR 1, zinc transporter of Arabidopsis thaliana (.1.2) Potri.005G110300 [exp] 62 / 3e-10 AT2G04620 483 / 2e-158 Cation efflux family protein (.1) Potri.016G045200 [exp] 44 / 0.0002 AT3G12100 536 / 0.0 Cation efflux family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01545 [flax] [poplar] Cation_efflux Cation efflux family
Representative CDS sequence Show only first row Show all	>Lus10040744 pacid=23157636 polypeptide=Lus10040744 locus=Lus10040744.g ID=Lus10040744.BGIv1.0 annot-version=v1.0 ATGGAGGAATATGATGAAGTCCCAATTTTGAGTTCGGACAGCCAGAGGGATATCGAGATGGTAATTCCTACCGAGGAAGAGGCTGAAATGGGAGGAAAAT CTTGTGAATGTGTTTGTGCCTTCTCTAAGCACGCAGATGATGTCGAAGAATCCAAAGATCGATCGAAATCGGCTGTGAAGCTATCCGGGCTCGTGGTTTT CTACTTGTTAGTTATGGCGGTTGAGATCATTGGTGGAATGAGGGCCAACAGCCTTGCAGTTCTAACGGATGCAGCACATCTGTTTACTGATGTTGCTGGC TTTGCTGTATCGCTTTTCACTTTATGGGTTTCGGGTTGGAAGGCCACATCGGACCATTCGTTCGGGTTCAGTAGACTCGAAGTCCTGGGCGCCTTGCTCT CCGTTCAGCTCATCTGGGTCATATCTGTGGTCCTAATTTACGAGGCAGTTAATAGGATTGTACATAAACAGGAAGAAGTGAAAGGTGGACTCATGTTTTG GATTGCAGCATTCGGGTTTGTCGTCAACTTGATCATGGTCCTCTGGCTCGGTCATGATCACTCCGGTCACACTCATCGCGATCACGATCACAATCATAAT CACAGTGATTCTCATCACGATCAGAATCACCATCACAGTCATGGTCATGATGCTCATGACAACAAGCATCTTCCTGCAAGAATCGAAGAACATGAAGAGA CCGAACTGGTACTGGGGTCTCCGCCAAAGACCAAATTCCTAAACATCAACGTGCAAGGCGCATATCTTCACGTGATTGCTGATCTGATCCAATCGGTCGG AGTAATGATTGCCGGAGCGGTCATATGGGCGAAACCACAGTGGTTGGTGGTTGACCTAATCTGCACTCTGGTGTTCTCTACGTTTGTCCTCTTCACAACG CTACCTATGCTGACTGATATCTATAATATACTGATGGAGAGGACGCCTAGCGACATCAATCTGGTGAAGCTGGAGAACGATCTTGTAAGTATAGGAGGCG TTCGAGAAATCCATGACCTTCACGTCTGGTCCATAACCGTCGGGAAACGAGTCTTATCTTGCCATGTGATAGCCAGCGAGCCTGACTCAAGGGAGGTAGT CGACAAGATTAAGGACTACTGTCAGGAAACGTACCGAATTTGCCATTGTACTGTCCAGATTGAGTTCCAAGGAACAGCTTAG
AA sequence Show only first row Show all	>Lus10040744 pacid=23157636 polypeptide=Lus10040744 locus=Lus10040744.g ID=Lus10040744.BGIv1.0 annot-version=v1.0 MEEYDEVPILSSDSQRDIEMVIPTEEEAEMGGKSCECVCAFSKHADDVEESKDRSKSAVKLSGLVVFYLLVMAVEIIGGMRANSLAVLTDAAHLFTDVAG FAVSLFTLWVSGWKATSDHSFGFSRLEVLGALLSVQLIWVISVVLIYEAVNRIVHKQEEVKGGLMFWIAAFGFVVNLIMVLWLGHDHSGHTHRDHDHNHN HSDSHHDQNHHHSHGHDAHDNKHLPARIEEHEETELVLGSPPKTKFLNINVQGAYLHVIADLIQSVGVMIAGAVIWAKPQWLVVDLICTLVFSTFVLFTT LPMLTDIYNILMERTPSDINLVKLENDLVSIGGVREIHDLHVWSITVGKRVLSCHVIASEPDSREVVDKIKDYCQETYRICHCTVQIEFQGTA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29410		ATMTPB1, MTPB1	metal tolerance protein B1 (.1...		Lus10040744 [exp]	0	1
AT3G57990			unknown protein		Lus10016270 [exp]	8.0	0.6774
AT5G04000			unknown protein		Lus10042034 [exp]	14.9	0.7006
AT3G26980		MUB4	membrane-anchored ubiquitin-fo...		Lus10032014 [exp]	17.5	0.6854
AT5G22060		ATJ2	ARABIDOPSIS THALIANA DNAJ HOMO...		Lus10008652 [exp]	18.0	0.6992
AT5G55630		ATTPK1, ATKCO1	TWO PORE K CHANNEL 1, TWO PORE...		Lus10000044 [exp]	22.8	0.6879
AT5G57860			Ubiquitin-like superfamily pro...		Lus10036598 [exp]	48.1	0.6767
AT2G37975			Yos1-like protein (.1)		Lus10000226 [exp]	49.5	0.6758
AT3G14430			unknown protein		Lus10030201 [exp]	63.2	0.6444
AT4G17010			unknown protein		Lus10006582 [exp]	63.3	0.6697
AT5G64350		FKP12, ATFKBP12...	ARABIDOPSIS THALIANA FK506-BIN...		Lus10003760 [exp]	66.9	0.6662

Compare expression of checked genes

Lus10040744 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.