Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59190 160 / 1e-43 subtilase family protein (.1) AT5G58820 158 / 4e-43 Subtilisin-like serine endopeptidase family protein (.1) AT5G58830 157 / 8e-43 Subtilisin-like serine endopeptidase family protein (.1) AT5G59090 155 / 3e-42 ATSBT4.12 subtilase 4.12 (.1.2.3) AT5G58840 154 / 8e-42 Subtilase family protein (.1) AT5G59120 152 / 6e-41 ATSBT4.13 subtilase 4.13 (.1) AT5G59100 150 / 4e-40 Subtilisin-like serine endopeptidase family protein (.1) AT3G46850 149 / 1e-39 Subtilase family protein (.1) AT3G46840 148 / 2e-39 Subtilase family protein (.1) AT5G59130 147 / 3e-39 Subtilase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016484 [exp] 258 / 6e-80 AT5G59100 672 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10016482 [exp] 199 / 8e-58 AT3G46850 709 / 0.0 Subtilase family protein (.1) Lus10040751 [exp] 194 / 3e-55 AT5G59100 632 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10040750 [exp] 189 / 4e-54 AT5G59120 714 / 0.0 subtilase 4.13 (.1) Lus10040749 [exp] 173 / 5e-51 AT5G58840 260 / 1e-80 Subtilase family protein (.1) Lus10004683 [exp] 144 / 7e-38 AT5G59190 600 / 0.0 subtilase family protein (.1) Lus10009868 [exp] 143 / 7e-38 AT5G03620 605 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10009867 [exp] 138 / 9e-36 AT5G59190 629 / 0.0 subtilase family protein (.1) Lus10020581 [exp] 135 / 5e-35 AT5G03620 653 / 0.0 Subtilisin-like serine endopeptidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G038001 [exp] 167 / 3e-46 AT3G46850 794 / 0.0 Subtilase family protein (.1) Potri.009G037900 [exp] 148 / 1e-39 AT5G59100 777 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.012G133200 [exp] 146 / 1e-38 AT5G59090 646 / 0.0 subtilase 4.12 (.1.2.3) Potri.010G196800 [exp] 139 / 2e-36 AT5G59100 599 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.010G196700 [exp] 138 / 4e-36 AT5G59100 579 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.006G114500 [exp] 136 / 3e-35 AT5G03620 874 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.010G196900 [exp] 136 / 3e-35 AT5G59100 657 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.003G120101 [exp] 134 / 1e-34 AT5G59190 536 / 0.0 subtilase family protein (.1) Potri.002G151900 [exp] 126 / 9e-32 AT4G00230 938 / 0.0 xylem serine peptidase 1 (.1) Potri.014G074500 [exp] 122 / 1e-30 AT4G00230 790 / 0.0 xylem serine peptidase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [flax] [poplar] Peptidase_S8 Subtilase family
Representative CDS sequence Show only first row Show all	>Lus10040747 pacid=23157619 polypeptide=Lus10040747 locus=Lus10040747.g ID=Lus10040747.BGIv1.0 annot-version=v1.0 ATGATTTGCATCATATCAATTTGCATCACCTTTGCATCCAACTTCAACGTACTCTTTTGCAACCCGGCTCCCAGCAATGGCGACCGGAAGGTTAGTATCA TCTTATTCGTTATTACGTACAACTTTAAAGTCTGTATAGACTCTCTAACTTCAACTTTAAAGTCTGTCGGAGTCATAGATACCGGGATTTGGTTGGAATT GCCTAGCTTTGACGACCGTGGTCTAGGTCCTCCTCCGGCCAAATGGAAGGGTGTGTGCAAAGGTGGACAAAATTTCACTTGCAACAACAAGATAATTGGA GCTCGGTATTACTCCGCGGTAGATTCGGCAAGGGATTTGGTAGGCCATGGGAGCCACACAGCATCAACTGCGGCAGGGAATGTGGTAGCGAACGCCAGCT TCTACGGGGTAGCGAGTGGCTATGCCAGAGGCGGACTTCCCTCAGCCAGGATCGCCGCGTACGCGGTGTGCGGCAAGGTCCACTGTGCGTCGGAGGACCT CCTGGCTGCATTCGATGACGCTATTGCTGACGCCGGATGTGAGTGCTCCAGGAGTGGATATACTGGCCGGGTGGTATCGCCCGGCGATGTGTCGTACGAC CGGAGACAGAACAATTACAATGTTATGTCGGGAACTTCCATGTCTTGTCCACATGTAGCCGGAATTGCTGCTTACATCAAGTCTCTGCACCCGAATTGGT CACCTTCCGCCATCAAATCCGCTATTATGACAACGGCCACTCCTATGCATTATGTGAGCGCCCATAGTATCGAAGCCGAACTTGCGTACGGGTCGGGTCA ACTGAATCCGACCAACGCCTCAAATCCAGGACTCGTGTACGAAACCTCGCCGGTTGACGATGTCAAGTTGCTGTGCAACTTGGGCCACAACACTGAAAAA GTCCGAGCTATTACCGGTCACAAGACTAGCACTTGCAAGGGTCGACCCGACCCGACAACGATAAACGACTTTAATTACCGTCTATTACTGCTGCCCTTCC GCCTAAGAGCGCGGATTCCTTCTCAATTCGGTTTATGA
AA sequence Show only first row Show all	>Lus10040747 pacid=23157619 polypeptide=Lus10040747 locus=Lus10040747.g ID=Lus10040747.BGIv1.0 annot-version=v1.0 MICIISICITFASNFNVLFCNPAPSNGDRKVSIILFVITYNFKVCIDSLTSTLKSVGVIDTGIWLELPSFDDRGLGPPPAKWKGVCKGGQNFTCNNKIIG ARYYSAVDSARDLVGHGSHTASTAAGNVVANASFYGVASGYARGGLPSARIAAYAVCGKVHCASEDLLAAFDDAIADAGCECSRSGYTGRVVSPGDVSYD RRQNNYNVMSGTSMSCPHVAGIAAYIKSLHPNWSPSAIKSAIMTTATPMHYVSAHSIEAELAYGSGQLNPTNASNPGLVYETSPVDDVKLLCNLGHNTEK VRAITGHKTSTCKGRPDPTTINDFNYRLLLLPFRLRARIPSQFGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59190			subtilase family protein (.1)		Lus10040747 [exp]	0	1
					Lus10038051 [exp]	3.2	0.9908
AT5G56990			unknown protein		Lus10029528 [exp]	4.5	0.9908
					Lus10003825 [exp]	5.5	0.9908
AT3G60630	GRAS	ATHAM2, LOM2	LOST MERISTEMS 2, ARABIDOPSIS ...		Lus10002205 [exp]	6.1	0.8222
AT3G12750		ZIP1	zinc transporter 1 precursor (...		Lus10014062 [exp]	6.3	0.9908
AT5G01660			unknown protein		Lus10040599 [exp]	7.1	0.9908
					Lus10029261 [exp]	7.7	0.9908
AT4G27420		ABCG9	ATP-binding cassette G9, ABC-2...		Lus10029635 [exp]	8.4	0.9908
AT5G15110			Pectate lyase family protein (...		Lus10030791 [exp]	8.9	0.9886
AT4G27570			UDP-Glycosyltransferase superf...		Lus10013367 [exp]	9.5	0.9849

Compare expression of checked genes

Lus10040747 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.