Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16920 240 / 3e-71 UBC23 ,PFU2 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) AT1G53025 223 / 3e-68 Ubiquitin-conjugating enzyme family protein (.1) AT3G15355 220 / 2e-66 UBC25 ,PFU1 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) AT1G53023 202 / 2e-62 Ubiquitin-conjugating enzyme family protein (.1) AT2G33770 210 / 4e-61 ATUBC24, UBC24, PHO2 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) AT5G41700 72 / 3e-15 ATUBC8, UBC8 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) AT4G27960 72 / 6e-15 UBC9 ubiquitin conjugating enzyme 9 (.1.2) AT1G64230 71 / 8e-15 UBC28 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) AT5G53300 71 / 9e-15 UBC10 ubiquitin-conjugating enzyme 10 (.1.2.3.4) AT5G56150 68 / 1e-13 UBC30 ubiquitin-conjugating enzyme 30 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037778 [exp] 375 / 7e-130 AT2G16920 256 / 9e-81 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Lus10016921 [exp] 340 / 1e-116 AT2G16920 235 / 3e-70 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Lus10034472 [exp] 239 / 6e-72 AT2G16920 907 / 0.0 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Lus10025070 [exp] 236 / 8e-70 AT2G16920 1209 / 0.0 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Lus10028151 [exp] 221 / 2e-67 AT1G53025 388 / 2e-129 Ubiquitin-conjugating enzyme family protein (.1) Lus10039831 [exp] 213 / 5e-65 AT3G15355 335 / 6e-110 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Lus10018596 [exp] 213 / 7e-65 AT3G15355 339 / 3e-111 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Lus10001214 [exp] 213 / 6e-64 AT2G33770 508 / 9e-171 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) Lus10042852 [exp] 206 / 3e-62 AT1G53025 318 / 5e-103 Ubiquitin-conjugating enzyme family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G146500 [exp] 295 / 6e-98 AT2G33770 255 / 3e-77 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) Potri.008G104400 [exp] 294 / 2e-97 AT3G15355 267 / 7e-84 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Potri.011G118800 [exp] 237 / 3e-72 AT3G15355 411 / 1e-135 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Potri.001G400300 [exp] 226 / 2e-68 AT3G15355 383 / 5e-125 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Potri.013G130800 [exp] 221 / 1e-67 AT3G15355 334 / 1e-107 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Potri.004G176000 [exp] 228 / 7e-67 AT2G16920 1045 / 0.0 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Potri.009G136000 [exp] 225 / 8e-66 AT2G16920 1069 / 0.0 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Potri.004G043500 [exp] 223 / 2e-65 AT2G33770 823 / 0.0 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) Potri.011G052600 [exp] 212 / 1e-61 AT2G33770 796 / 0.0 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) Potri.013G108500 [exp] 151 / 5e-43 AT2G16920 152 / 9e-41 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0208 [flax] [poplar] UBC PF00179 [flax] [poplar] UQ_con Ubiquitin-conjugating enzyme
Representative CDS sequence Show only first row Show all	>Lus10040748 pacid=23157875 polypeptide=Lus10040748 locus=Lus10040748.g ID=Lus10040748.BGIv1.0 annot-version=v1.0 ATGTCTACTCCTCCGCCTCCTGCGGCCGCCGCCGCCTTCCCGCGATTCGACGTGGTCTCCGGCGTCCCATCGGACAACAGCTTTCTCTCCACCACCAAGG CCCCAACCTCCATCCCACCCGCCGCCTCCAAGTCTATTTATCACGAATGGAAGATCCTCCAAAACCACCTACCCGATTCCATCTCCGTCCGGGTCTACGA GAACCGGATCGACATCCTCCGCGCCGTCATCGTCGGCGCCGCTGGAACTCCTTACTACGACGGCCTCTACTTCTTCGACATCGCGTTCCCGACCGACTAT CCACAATCCCCTCCGGAAGTAACGTACAGGTCGTTCGGGTTGCGTATCAACCCGAACCTGTACGAGAACGGGAAAGTCTGCTTAAGCCTGATCAACACCT GGCCCGGCCGGAATCAGGGCGAAAATTGGAACCCGGGTCAATCGACGATCCTCCAGGTTCTGGTCTCGATTCAGGGCCTGGTTCTGAACGAGAAGCCCTA TTTCAACGAGCCGTTGCTGGTGCCCTGGGTTAAGAACGAGAGGTGGTCGAATTCGTACAACGAGCACGTGTTCGAGCTCTGCTGCAAGACGATGCTTCAA TTGATGAGGAATCCGCCGGGGAATTTCCAAGGGTTCGTCGGGGCGCATTTTAAGGAGAGGGGGTTTTGGATTCTGAAGGCGATTGAGGCCTATGCGAATG AGGAGTGCAGAGTCGGGTATTACGGGACGGAGGAGGGGGATTCGAGAGGTGAACCGCCGTCCGAGAGATTCAAGGGTTCTATTTTGAAGCTGCGGTTGGA ATTGAGTGTTGCATTTGGTAAGGTTGGGGCGCCGGTGGAGGATTTAGAGGAGAAATCGACAAGGCTGATTCTGCTAGAAAAGGAGGAGGAAGAGAAGAAG AAGAAGAAGATGAAGAAGAGTGGGGAGATGCTGATGTGTCTTTTTGGGATCCTATTCTTATTTGCTATTATAATGTTTATTATTAGTTACCGGATCTCAC CGGAGGATTTTATGTCCCTTGAGAATGTAGAATGGAATTTGAATAAAAGTGATAAAGTTTTTTAA
AA sequence Show only first row Show all	>Lus10040748 pacid=23157875 polypeptide=Lus10040748 locus=Lus10040748.g ID=Lus10040748.BGIv1.0 annot-version=v1.0 MSTPPPPAAAAAFPRFDVVSGVPSDNSFLSTTKAPTSIPPAASKSIYHEWKILQNHLPDSISVRVYENRIDILRAVIVGAAGTPYYDGLYFFDIAFPTDY PQSPPEVTYRSFGLRINPNLYENGKVCLSLINTWPGRNQGENWNPGQSTILQVLVSIQGLVLNEKPYFNEPLLVPWVKNERWSNSYNEHVFELCCKTMLQ LMRNPPGNFQGFVGAHFKERGFWILKAIEAYANEECRVGYYGTEEGDSRGEPPSERFKGSILKLRLELSVAFGKVGAPVEDLEEKSTRLILLEKEEEEKK KKKMKKSGEMLMCLFGILFLFAIIMFIISYRISPEDFMSLENVEWNLNKSDKVF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16920		UBC23 ,PFU2	PHO2 FAMILY UBIQUITIN CONJUGAT...		Lus10040748 [exp]	0	1
AT3G49250		IDN1, DMS3	INVOLVED IN DE NOVO 1, defecti...		Lus10003997 [exp]	10.1	0.6340
AT1G14550			Peroxidase superfamily protein...		Lus10024206 [exp]	41.6	0.5521
AT1G65000			unknown protein		Lus10026159 [exp]	59.2	0.5407
AT2G23200			Protein kinase superfamily pro...		Lus10010443 [exp]	71.0	0.5248
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10006702 [exp]	97.2	0.4998
					Lus10029488 [exp]	98.7	0.5199
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10006704 [exp]	134.7	0.5006
AT1G03050			ENTH/ANTH/VHS superfamily prot...		Lus10000201 [exp]	279.3	0.4599

Compare expression of checked genes

Lus10040748 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.