Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58840 260 / 8e-81 Subtilase family protein (.1) AT5G58820 258 / 6e-80 Subtilisin-like serine endopeptidase family protein (.1) AT5G59190 256 / 2e-79 subtilase family protein (.1) AT3G46850 249 / 3e-76 Subtilase family protein (.1) AT5G59100 248 / 1e-75 Subtilisin-like serine endopeptidase family protein (.1) AT5G59120 247 / 1e-75 ATSBT4.13 subtilase 4.13 (.1) AT5G59090 247 / 1e-75 ATSBT4.12 subtilase 4.12 (.1.2.3) AT3G46840 244 / 2e-74 Subtilase family protein (.1) AT5G59130 240 / 4e-73 Subtilase family protein (.1.2) AT5G58830 237 / 4e-72 Subtilisin-like serine endopeptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040750 [exp] 360 / 2e-118 AT5G59120 714 / 0.0 subtilase 4.13 (.1) Lus10040751 [exp] 357 / 6e-116 AT5G59100 632 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10016484 [exp] 335 / 4e-109 AT5G59100 672 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10016482 [exp] 333 / 2e-108 AT3G46850 709 / 0.0 Subtilase family protein (.1) Lus10004685 [exp] 222 / 4e-66 AT4G00230 647 / 0.0 xylem serine peptidase 1 (.1) Lus10004683 [exp] 217 / 1e-64 AT5G59190 600 / 0.0 subtilase family protein (.1) Lus10009868 [exp] 212 / 1e-62 AT5G03620 605 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10009867 [exp] 216 / 2e-62 AT5G59190 629 / 0.0 subtilase family protein (.1) Lus10040253 [exp] 211 / 3e-62 AT5G59090 640 / 0.0 subtilase 4.12 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G038001 [exp] 283 / 3e-89 AT3G46850 794 / 0.0 Subtilase family protein (.1) Potri.009G037900 [exp] 258 / 6e-80 AT5G59100 777 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.012G133200 [exp] 229 / 2e-68 AT5G59090 646 / 0.0 subtilase 4.12 (.1.2.3) Potri.010G196800 [exp] 228 / 2e-68 AT5G59100 599 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.010G196900 [exp] 223 / 1e-66 AT5G59100 657 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.006G114500 [exp] 204 / 2e-59 AT5G03620 874 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.002G151900 [exp] 197 / 6e-57 AT4G00230 938 / 0.0 xylem serine peptidase 1 (.1) Potri.001G002200 [exp] 181 / 6e-51 AT4G26330 891 / 0.0 UNFERTILIZED EMBRYO SAC 17, Subtilisin-like serine endopeptidase family protein (.1) Potri.009G144500 [exp] 181 / 8e-51 AT5G59810 508 / 9e-170 Subtilase family protein (.1) Potri.001G450401 [exp] 179 / 2e-50 AT4G10550 938 / 0.0 Subtilase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family
Representative CDS sequence Show only first row Show all	>Lus10040749 pacid=23157853 polypeptide=Lus10040749 locus=Lus10040749.g ID=Lus10040749.BGIv1.0 annot-version=v1.0 ATGATTAAGAATCTTAACTCTGGTACTGATATTGTTGTGGGACTGTTGGACACCGGAGTTTGGCCGGAATTACCTAGCTTTCACGACCGTGGTCTAGGTC CTCCTCCGGCCAAATGGAAGGGTGCGCGGACAAAATTTCACTTGCAACAAGTCTATATTATTTACATGGGAGCATTGCCTACGCATCAATACTCCCCTAC TGATCATCATCTCTCTCTAATTCAAGAGGTTCTCGATGGCAACTCGGGCCAAGAAGAACTATTGGTAAACAGTTACAAGAGAAGTTTCAACGGATTTGCG GCTAATCTAACTGATGCTGAGGCTCAAAAGCTGTCTAATAGAAACGATGTGGTGTCTGTTTTTCCGAGTAACAACCTACAGCTTCAGACCACAAGATCAT GGGATTTCTTAGGTCTCCCTCAACCTACAATGACTCCTCGGCTTAAAGCCGGTAGTGATGTCGTGGTTGGGTTGATAGATACCGGTATTTGGCCGGAATT GGCTAGTTTTGACGATTGTGGATTTGGTCCTCCACCAGCAAAATGGAAGGGTGTGTGCAAAGGCGGACAAAATTTCACTTGCAACAACAAGATAATCGGA GCTCGCTATTACTCCAATCTCGAATCAGCAAGGGATATATCGGGTCATGGAAGCCACACAGCTTCAACAGCAGTAGGGAATGTGGTCAACGACGCAAGCT TTTATGGGGTAGCGAGTGGCGTCGCAAGAGGCGGGCTTCCCTCCGCTAGGATCGCCCAAGATAATCGGAGCTCGCTATTACTCCATTCCCAAATCGGCAA GGGACACATTCGGTCACGAGACCCACACATCGTCAATAGCTTAGGAAATGTGGTCAATGGTGCAAACTTTTACGGGATAGCAAGTGGGGTCGCCAGAAGC GGACTTCCCTCCGCTAAGATCGTCGTGTACGCGGTGTGTGGCATTTTCTCCTGTCAGCCTTCGAACGACATTCTGGCAGCCTTCGGTGACGCTATTGCTG ACGGTGTTGATGTTATATCCATCTCCTCAAGAGGTCCCAATTCTATAATTCCCGGTATTCTCAAGGTATAA
AA sequence Show only first row Show all	>Lus10040749 pacid=23157853 polypeptide=Lus10040749 locus=Lus10040749.g ID=Lus10040749.BGIv1.0 annot-version=v1.0 MIKNLNSGTDIVVGLLDTGVWPELPSFHDRGLGPPPAKWKGARTKFHLQQVYIIYMGALPTHQYSPTDHHLSLIQEVLDGNSGQEELLVNSYKRSFNGFA ANLTDAEAQKLSNRNDVVSVFPSNNLQLQTTRSWDFLGLPQPTMTPRLKAGSDVVVGLIDTGIWPELASFDDCGFGPPPAKWKGVCKGGQNFTCNNKIIG ARYYSNLESARDISGHGSHTASTAVGNVVNDASFYGVASGVARGGLPSARIAQDNRSSLLLHSQIGKGHIRSRDPHIVNSLGNVVNGANFYGIASGVARS GLPSAKIVVYAVCGIFSCQPSNDILAAFGDAIADGVDVISISSRGPNSIIPGILKV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58840			Subtilase family protein (.1)		Lus10040749 [exp]	0	1

Compare expression of checked genes

Lus10040749 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.