Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59100 692 / 0 Subtilisin-like serine endopeptidase family protein (.1) AT5G59120 688 / 0 ATSBT4.13 subtilase 4.13 (.1) AT5G59090 678 / 0 ATSBT4.12 subtilase 4.12 (.1.2.3) AT5G59130 668 / 0 Subtilase family protein (.1.2) AT5G58840 663 / 0 Subtilase family protein (.1) AT3G46840 658 / 0 Subtilase family protein (.1) AT3G46850 658 / 0 Subtilase family protein (.1) AT5G58830 638 / 0 Subtilisin-like serine endopeptidase family protein (.1) AT5G58820 638 / 0 Subtilisin-like serine endopeptidase family protein (.1) AT5G59190 629 / 0 subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040751 [exp] 1001 / 0 AT5G59100 632 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10016482 [exp] 954 / 0 AT3G46850 709 / 0.0 Subtilase family protein (.1) Lus10016484 [exp] 920 / 0 AT5G59100 672 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10002964 [exp] 583 / 0 AT5G59100 624 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10004685 [exp] 579 / 0 AT4G00230 647 / 0.0 xylem serine peptidase 1 (.1) Lus10009867 [exp] 573 / 0 AT5G59190 629 / 0.0 subtilase family protein (.1) Lus10040253 [exp] 561 / 0 AT5G59090 640 / 0.0 subtilase 4.12 (.1.2.3) Lus10042555 [exp] 546 / 0 AT5G59100 603 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10009868 [exp] 543 / 0 AT5G03620 605 / 0.0 Subtilisin-like serine endopeptidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G038001 [exp] 747 / 0 AT3G46850 794 / 0.0 Subtilase family protein (.1) Potri.009G037900 [exp] 692 / 0 AT5G59100 777 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.012G133200 [exp] 602 / 0 AT5G59090 646 / 0.0 subtilase 4.12 (.1.2.3) Potri.010G196900 [exp] 599 / 0 AT5G59100 657 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.010G196800 [exp] 592 / 0 AT5G59100 599 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.006G114500 [exp] 548 / 0 AT5G03620 874 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.010G196700 [exp] 535 / 0 AT5G59100 579 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.002G151900 [exp] 518 / 3e-174 AT4G00230 938 / 0.0 xylem serine peptidase 1 (.1) Potri.003G120101 [exp] 502 / 4e-169 AT5G59190 536 / 0.0 subtilase family protein (.1) Potri.011G165900 [exp] 477 / 6e-158 AT2G04160 882 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family
Representative CDS sequence Show only first row Show all	>Lus10040750 pacid=23157601 polypeptide=Lus10040750 locus=Lus10040750.g ID=Lus10040750.BGIv1.0 annot-version=v1.0 ATGGGTAAATTCAACTCTATACTACGTCTTCTTACAGTTTGCATTATCTTTGCATCCAGCATCAGCCGACACGGTTGCGTCGCAGATACTACTAGCAATG GCGACCGGAAAGTCTATATTGTTTACATGGGAGCATTGCCTAAGCACCAATACTCCCTTACTGATCATCATCTCTCTCTAATTCAAGAGGTTCTCGATGA CGACAGCTCCAGCCAAGAAGAACTATTGGTAAACACTTATAACAGAAGTTTCAACGGCTTTGCAGCGAAACTAACCGACGCAGAGGCCCAAAAACTGTCT AAGAGGAACGACATAGTGTCTGTTTTTCCGAGTACAAACTTACAGATCCAGACCACGAGATCATGGGACTTTTTGGGGCTCCCTCAACCTACAGTGGCTC CTAGGCTTAAAGCCGGTAGTGATGTCGTGGTCGGAGTCATAGATACTGGAATTTGGCCCGAATCGGCTAGTTTTGACGACCGTGGTTTCAGTCCACCCCC AGTGAAATGGAAGGGTGTGTGCAAAGGTGGAAAAAATTTCACTTGCAACAATAAGATAATTGGAGCTCGCTATTACTCTGTTCCCGAATCAGCAAGGGAC ATAGTGGGCCATGGATCCCACACAGCGTCAACAGCGGCAGGGAATGCGGTCAGCGGTGCAAGTTTTTACGGCATAGCAAATGGGGTCGCCAGAGGCGGGC TTCCTTCCGCGAGGATCGCCGTGTATGCAGTGTGTGGCGTTTCATCATGTCCGTCGAACGACCTTCTGGCTGCCTTTGATGACGCTATTGCTGACGGTGT TGATGTTATATCCATCTCTATTGGATCGACTAGTCCTCTTCAATTGGGGGATGACCCCATCCAAATTGTCAGCTTTCACGCCGCGAGCAAAGGGATCCTC ACCGTACAGTCTGCCGGCAATAGCGGTCCAGACACTGCAAGCACCGGGAGCGTGGTTCCGTGGTTGCTTTCTGTGGCGGCAAGTACCACCGACCGGAAAT TCGAATCTAAAGTGGTGCTTGGAAACGGGAAGATAGTTGTGGGTAGCTCAATTAATGGATTCAATCAGAGTTTGAATGAGCTCCCTTTGATAGATGGGAT CAAAGCATCAAATAACACTTGCACTGAAGAGGAAGCAAGCAAATGCAATCAGCTTTGCCTTCACGATAGCGTATTGAAAGGGAAAATTTTGGTTTGCACC TCGATCAACGGTCAGAGCAGCGCTTTGGATGCTCAAGCTGCCGGGCTTATCTTTCTTGACGAAAGACCTGACAGGGGTCACATCCTCCCGTTGCCTGGCG TCCAGGTCGATCGACCATCCATCGATTCCATACTTGCCTACATGCGGTCTACACCTAATCCAATTGCGAAGATATTGAAAAGTGACACAGTCACAGTCCC CGGTGCTCCGATAGTTGCCGCCTTCTCATCCAGAGGTCCTAATGCTGTAATTCCCGGCATTCTCAAGCCGGATGTTAGTGCTCCCGGAGTGGAAATATTG GCTGCATGGTCTCCAAGGTCGTCACCAAGTGGAAACGTACTGGACGTAAGACAAACAAACTTCAATGTTATATCTGGGACTTCTATGGCTTGTCCTCATG TTGCTGGTATTGCTGCTTACATCAAGTCTTTGTTCCCGAGTTGGTCACCTTCTGCCATTCAGTCCGCTATTATGACTACAGCAACACCTATGCACCCTCC AAGTGCTGTGGATCGAGCTCTTCAATATGTTTCGGCAGAATTCTCTTATGGATCGGGTCAACTGAATCCGGTGAACGCTACGAATCCAGGACTCGTGTAT GAAACCTTGCTGGAGGACTACGTCAAGTTGCTATGCAACTTGGGTTATGGTACCGATGGAGTTCGAGCTATTACAGGCGACAAGACCGTCACATGCACGG ATCAACCCAACCCGACAGTAATAAAGGACTTCAATTACCCGTCCATTGCTGCTGCTCTTGAGCCTAATAAGAGTGCCGCTTCCTTCTTGGTTCAATTTAC GAGAACAGTAACAAATGTCGGATCTACGAGGTCGACGTACAAGGCACAAATTGTCGGCGGGATAGGGCTGAAGATTGAAGTGACGCCGGCAGTTTTGTCA TTTGTGTCTTTAAATGAGAAGATGTCTTTTAATGTTACTGTTTTGGGCAGTAATATCCGGAAATTGGGACTTTTTGCTTCTGCTTCGTTGATTTGGAGTG ACGGGACTCATAGCATCAGGAGTCCAATTGTCATCTACACAAACTTGACTTAG
AA sequence Show only first row Show all	>Lus10040750 pacid=23157601 polypeptide=Lus10040750 locus=Lus10040750.g ID=Lus10040750.BGIv1.0 annot-version=v1.0 MGKFNSILRLLTVCIIFASSISRHGCVADTTSNGDRKVYIVYMGALPKHQYSLTDHHLSLIQEVLDDDSSSQEELLVNTYNRSFNGFAAKLTDAEAQKLS KRNDIVSVFPSTNLQIQTTRSWDFLGLPQPTVAPRLKAGSDVVVGVIDTGIWPESASFDDRGFSPPPVKWKGVCKGGKNFTCNNKIIGARYYSVPESARD IVGHGSHTASTAAGNAVSGASFYGIANGVARGGLPSARIAVYAVCGVSSCPSNDLLAAFDDAIADGVDVISISIGSTSPLQLGDDPIQIVSFHAASKGIL TVQSAGNSGPDTASTGSVVPWLLSVAASTTDRKFESKVVLGNGKIVVGSSINGFNQSLNELPLIDGIKASNNTCTEEEASKCNQLCLHDSVLKGKILVCT SINGQSSALDAQAAGLIFLDERPDRGHILPLPGVQVDRPSIDSILAYMRSTPNPIAKILKSDTVTVPGAPIVAAFSSRGPNAVIPGILKPDVSAPGVEIL AAWSPRSSPSGNVLDVRQTNFNVISGTSMACPHVAGIAAYIKSLFPSWSPSAIQSAIMTTATPMHPPSAVDRALQYVSAEFSYGSGQLNPVNATNPGLVY ETLLEDYVKLLCNLGYGTDGVRAITGDKTVTCTDQPNPTVIKDFNYPSIAAALEPNKSAASFLVQFTRTVTNVGSTRSTYKAQIVGGIGLKIEVTPAVLS FVSLNEKMSFNVTVLGSNIRKLGLFASASLIWSDGTHSIRSPIVIYTNLT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59120		ATSBT4.13	subtilase 4.13 (.1)		Lus10040750 [exp]	0	1
					Lus10011832 [exp]	4.7	1.0000
AT2G20420			ATP citrate lyase (ACL) family...		Lus10022902 [exp]	7.3	1.0000
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10025763 [exp]	9.8	1.0000
					Lus10027689 [exp]	9.8	1.0000
					Lus10027991 [exp]	18.3	1.0000
					Lus10022518 [exp]	18.3	1.0000
					Lus10003536 [exp]	18.5	1.0000
					Lus10009727 [exp]	19.4	1.0000
AT2G39510			nodulin MtN21 /EamA-like trans...		Lus10040310 [exp]	19.7	0.9816
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Lus10005236 [exp]	21.0	1.0000

Compare expression of checked genes

Lus10040750 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.