Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59130 598 / 0 Subtilase family protein (.1.2) AT5G59100 595 / 0 Subtilisin-like serine endopeptidase family protein (.1) AT5G58840 590 / 0 Subtilase family protein (.1) AT5G59090 582 / 0 ATSBT4.12 subtilase 4.12 (.1.2.3) AT5G59120 579 / 0 ATSBT4.13 subtilase 4.13 (.1) AT5G59190 556 / 0 subtilase family protein (.1) AT5G58830 552 / 0 Subtilisin-like serine endopeptidase family protein (.1) AT3G46840 550 / 0 Subtilase family protein (.1) AT5G58820 492 / 1e-162 Subtilisin-like serine endopeptidase family protein (.1) AT1G20160 409 / 3e-130 ATSBT5.2 Subtilisin-like serine endopeptidase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040750 [exp] 1000 / 0 AT5G59120 714 / 0.0 subtilase 4.13 (.1) Lus10016484 [exp] 829 / 0 AT5G59100 672 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10016482 [exp] 829 / 0 AT3G46850 709 / 0.0 Subtilase family protein (.1) Lus10009868 [exp] 484 / 5e-160 AT5G03620 605 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10004683 [exp] 465 / 1e-152 AT5G59190 600 / 0.0 subtilase family protein (.1) Lus10002964 [exp] 454 / 4e-147 AT5G59100 624 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10040253 [exp] 451 / 9e-147 AT5G59090 640 / 0.0 subtilase 4.12 (.1.2.3) Lus10042555 [exp] 445 / 6e-144 AT5G59100 603 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10009867 [exp] 457 / 2e-142 AT5G59190 629 / 0.0 subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G038001 [exp] 635 / 0 AT3G46850 794 / 0.0 Subtilase family protein (.1) Potri.009G037900 [exp] 578 / 0 AT5G59100 777 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.010G196800 [exp] 508 / 2e-168 AT5G59100 599 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.012G133200 [exp] 467 / 9e-152 AT5G59090 646 / 0.0 subtilase 4.12 (.1.2.3) Potri.010G196700 [exp] 452 / 5e-148 AT5G59100 579 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.006G114500 [exp] 452 / 4e-147 AT5G03620 874 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.003G120101 [exp] 417 / 2e-134 AT5G59190 536 / 0.0 subtilase family protein (.1) Potri.009G145600 [exp] 396 / 9e-126 AT5G03620 615 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.001G455800 [exp] 380 / 2e-119 AT4G10550 558 / 0.0 Subtilase family protein (.1.2.3) Potri.011G150900 [exp] 380 / 8e-119 AT1G32960 744 / 0.0 Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family
Representative CDS sequence Show only first row Show all	>Lus10040751 pacid=23157742 polypeptide=Lus10040751 locus=Lus10040751.g ID=Lus10040751.BGIv1.0 annot-version=v1.0 ATGGGTAGATTCAACTCTACACTACATATTCTTACAGTTTGCATTATCCTAGCATCCAATATCGACCTACTCTTTTGCGACACAGACACTACTAGCAATG GCGACCGAAAAGTCTATATTGTTTACATGGGTGCATTGCCTAAGCACCAATACTCCCCTACCGATCACCATCTCTCTCTAATTCAGGAGGTTCTCGATGA CAACTCGAGCCTAGAAGTAGAAGAACTATTGGTAAACAGTTACAAAAGAAGTTTCAACGGATTCGCAGCCAAGCTAACTGACACGGAGGCCCAAAAACTG TCTAAGAGGAACGGCGTAGTGTCTGTTTTTCCGAGTACAAACCTAAAGCTTCAGACCACGAGATCATGGGATTTCTTGGGTTTCCCTCAACCTACACTGA CTCCTAGGCTTAAAGCCGGCAGTGATGTCGTGGTTGGATTGATAGATACCGGTATTTGGCCGGAATCGCCTAGTTTTGAAGACCGTGGATTCGGTCCTCC CCCAGCGAAATGGAAGGGTGTGTGTAAAGGCGGACAAAATTTCACTTGCAACAATAAGATAATCGGAGCCCGTAAATACAAATTTCCCCATGCAGCAACG GATATCTTGGGTCATGGAACCCACACAGCGTCAACAGCAGCAGGGAATGTTGTCAACGACGCAAGCTTTTATGGGATAGCGAGTGGCGTAGCCAGAGGAG GGTTTCCCTCCGCTAGGATTGCTGTGTATGCTGTGTGCGACCGTCTTGAATGTCCGGCGGACGACATTTTGGCCGCCTACGACGACGCTATTGCCGATGG TGTTGATGTTTTATCCATCTCACTTGGGTTTGATATTAATGCTGTTCCCTTGGATAATGATCCCGTCCAAATCGGCAGTTTTCACTCTGCGAGCAAAGGG ATCCTCACTGTACAATCTGCCAGCAATAACGGCCCGGACGCTGCCAGCATCACAAGTGTGTCTCCGTGGCTGCTGTCTGTGGCGGCTAGTACCATCGATC GAAAGTTTGAATCTAAAGTGATGCTTGGAAACGGGAAGATAATCGTGGGGAGCTCAATTAATAATGGATTCAATGAGAGTGGGAGTGAGATCCCTTTGAT AGATGGGATCAAAGCATCAACAAACACTTGCACTGAAAAGGACGCGAGCGATTGCAATTTTGGCTGCCTCAACAACACTTTAGTGATGGGGAAAATTCTG GTATGCACCTCGTTGACCAACGGTGCGAGTGCTGCTTTCGATGCTAGGGCTGCAGGGCTTATCTTTCTTGAAGAAAGACCTGACAGGGGCCGCGTCCTCC CGTTGCCTGGCATCGAGCCGGATGTTACTGCCCCTGGGGTGGGAATATTGGCTGCATGGTCTCCGAAGGCATCACCAAGTAAATTCCTATTTGACACAAG AACGACCAACTTCAATGTTCTATCTGGTACTTCTATGGCTTGTCCACATGTTGCTGGTATTGCTGCTTACATAAAGTCTCTGTTTCCGAGTTGGTCACCT TCTGCCATTCAATCCGCTATTATGACCACCGCAACACCGATGCACCCTTCAAGTGGTGTGGATCCAAATCTTCAATACCTTTCGGCGGAATTCTCTTACG GGTCGGGTCAATTTAATCCGGTGAACGCCACAAATCCAGGACTCGTGTATGAAACCTTGCCGGGGGACTACATCAAGTTGCTATGCAACTTGGGTTACAA TACCAGTACAGTTCGAGCTATTACTGGCGACGAGACTGTGACATGCAAGGGTCAACCTAACCCAACAGCGACAAACGACTTCAATTACCCATCCATTACA GCAGCCCTTCAGCCTAAGAGTGTCGCTTCCTTTTCTGTTCAATTTACGAGAACGGTAAAGAATGTCGGATCTGCAAAGTCGATGTACAAGGCACAAATTG TCGGCGGGAAAGGGCTGAAGATTGAAGTGACGCCGCCACTTCTGTCATTCGGGTCTTTAAATGAGAAGCTGTCTTTTAATGTTACTGTTTCCGGAGGTAA TGTCCCACAAAAGGGATTCTTTACTTCTGCTTCGTTGATTTGGAGTGACGGGACTCGTAATCCGGATGTGAGTGCACCTGGAGTGAATATATTGGCCGGG TGTTCTCCGGGGGTATCACTAAGTGACGACCCGGATGACAAAAGAGAGTACCACTTCAATATTATATCCGGAACTTCTATGGCTTGTCCACATGTTGCTG GGATCGCTGCTTACATCAAGTCTTTGTACCCAAATTGGTCACCTTCCGCCATTAAATCGGCCATCATTACCACCGCAACACCCATGGTTCCTGGTCCGGA TCTTGCATTTGACAATGCGGAATCTACATACGGATCTGGCCAACTGAATCCGGTGAATGCAACAAATCCAGGACTAGTGTACGAAACCTTGCTGCAGGAC GACATCAATTTGCTCTGCAACTTGGGCTATGGTACCAAGAGAGTGAGAGCGATTACTGGGGATCAACCTGACGAGGCAGCAATAAACGACTTCAACTACC CGTCCATTTCTGCTGCTGTTCAGGTCAATAGCACTTTTTTCTCACTCAGATTTAAACGAACAGTGACGAATGTCGGTTCTGCAAATTCGACATACAGAGC AAAAATCGTGCCGACGAACAAAAGAAGGGAGAGGGCTGAAGATCGAACTGACGCCGCTAGTTATGTCTTTGGGATCTTTAAATCAGAAGGTCTCTTTTAC CGTTAG
AA sequence Show only first row Show all	>Lus10040751 pacid=23157742 polypeptide=Lus10040751 locus=Lus10040751.g ID=Lus10040751.BGIv1.0 annot-version=v1.0 MGRFNSTLHILTVCIILASNIDLLFCDTDTTSNGDRKVYIVYMGALPKHQYSPTDHHLSLIQEVLDDNSSLEVEELLVNSYKRSFNGFAAKLTDTEAQKL SKRNGVVSVFPSTNLKLQTTRSWDFLGFPQPTLTPRLKAGSDVVVGLIDTGIWPESPSFEDRGFGPPPAKWKGVCKGGQNFTCNNKIIGARKYKFPHAAT DILGHGTHTASTAAGNVVNDASFYGIASGVARGGFPSARIAVYAVCDRLECPADDILAAYDDAIADGVDVLSISLGFDINAVPLDNDPVQIGSFHSASKG ILTVQSASNNGPDAASITSVSPWLLSVAASTIDRKFESKVMLGNGKIIVGSSINNGFNESGSEIPLIDGIKASTNTCTEKDASDCNFGCLNNTLVMGKIL VCTSLTNGASAAFDARAAGLIFLEERPDRGRVLPLPGIEPDVTAPGVGILAAWSPKASPSKFLFDTRTTNFNVLSGTSMACPHVAGIAAYIKSLFPSWSP SAIQSAIMTTATPMHPSSGVDPNLQYLSAEFSYGSGQFNPVNATNPGLVYETLPGDYIKLLCNLGYNTSTVRAITGDETVTCKGQPNPTATNDFNYPSIT AALQPKSVASFSVQFTRTVKNVGSAKSMYKAQIVGGKGLKIEVTPPLLSFGSLNEKLSFNVTVSGGNVPQKGFFTSASLIWSDGTRNPDVSAPGVNILAG CSPGVSLSDDPDDKREYHFNIISGTSMACPHVAGIAAYIKSLYPNWSPSAIKSAIITTATPMVPGPDLAFDNAESTYGSGQLNPVNATNPGLVYETLLQD DINLLCNLGYGTKRVRAITGDQPDEAAINDFNYPSISAAVQVNSTFFSLRFKRTVTNVGSANSTYRAKIVPTNKRRERAEDRTDAASYVFGIFKSEGLFY R

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59100			Subtilisin-like serine endopep...		Lus10040751 [exp]	0	1
AT2G41970			Protein kinase superfamily pro...		Lus10021070 [exp]	1.0	0.7207
AT4G02610			Aldolase-type TIM barrel famil...		Lus10014725 [exp]	6.7	0.6570
					Lus10000761 [exp]	13.4	0.6272
					Lus10025813 [exp]	17.1	0.6783
AT5G41610		ATCHX18	cation/H+ exchanger 18, ARABID...		Lus10017541 [exp]	23.2	0.6779
AT1G08500		AtENODL18	early nodulin-like protein 18 ...		Lus10009231 [exp]	25.1	0.6597
AT5G39210		CRR7	chlororespiratory reduction 7 ...		Lus10032982 [exp]	25.9	0.6802
AT5G64620		ATC/VIF2, C/VIF...	cell wall / vacuolar inhibitor...		Lus10029877 [exp]	27.1	0.5933
AT4G16480		ATINT4	inositol transporter 4 (.1)		Lus10039050 [exp]	27.9	0.6491
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10024889 [exp]	30.0	0.6743

Compare expression of checked genes

Lus10040751 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.