Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24670 136 / 8e-37 TAD3, EMB2820 tRNA adenosine deaminase 3, EMBRYO DEFECTIVE 2820, Cytidine/deoxycytidylate deaminase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016480 [exp] 327 / 4e-110 AT5G24670 392 / 4e-135 tRNA adenosine deaminase 3, EMBRYO DEFECTIVE 2820, Cytidine/deoxycytidylate deaminase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G094800 [exp] 170 / 4e-49 AT5G24670 411 / 3e-142 tRNA adenosine deaminase 3, EMBRYO DEFECTIVE 2820, Cytidine/deoxycytidylate deaminase family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040753 pacid=23157851 polypeptide=Lus10040753 locus=Lus10040753.g ID=Lus10040753.BGIv1.0 annot-version=v1.0 ATGAAGTACAGAGAGAGACGGCGGAGGAAGGCTGACGGTAACGGGGAATCCGAGAGGAAGAGGATGGTGATGTCGATCAGCACTGGCCAGGAGCTCCTCA AGGAAATCTGTCACATCCCTGACAGCCCACCGATCCCTCCTGATCAGCAACCCACCGGTAATGATCCTGTCCTCCGCTTTCGGCGCCTTTGTGTTCTTCC TCCATTTTCCCGCTCTATTTCTGACAATGTCGTTTTCAGTGAACGTGTTTGCTTCAGTGATCAACGAGCCAAAGCAGGCCAATGCTCTCATAAGGTCAAA GTCTTCCTTCAATACTTTAGTCTCGTGCAGGTATGCAAATATGCTTCTAAAGAACATTGGGAAGAACAATGCAGGCTCTGGCCGACATCATACCATCCTC CTACGTTCAATATTGATGGCATTAATGGATTCAGTGATGAGAGTGCACAATCGGTCTACCCGTTCATGAAAGTTGCTATTAAGTTGGCAAAGGCTAGTGA CAATCTGCACAGCAAATTGTTGCAAGTGCGTGTGACACACTCACGGCATGATTACACGAACAAAAATGGCATTGCGGGTGGTAAATGCCACGAACAGCCG TCAGCTTCTAATTGTAGCAATGGTTCAAATGGGAGGACATCAGAGGAAGAAAGATTGTGCATTGCTGCTTCCTGTTTAAACCCTTGGCAGTGGTCTCAGA CTGCTTCAACTTCTCACGATTGGCACCCCTTGCGGCATGCTGCTCTTGTTGCTATCGAATCTTCTTCAGACAGGGACCGGCACCTCTTCCCTTGTTTCGA AAGTGCTGCAAAGCAGTCCTTTGAAGAGGAGTCTGTGCTCTCTGTTTGTGCAAGGCCGCCTGCCAAAAGGCAGAAACCTCACCATGAAAACGTAAGCTTC ATCCACTCGACAAGTGTGCGATGGCACTCGTTCACCAGCGAATCAGGCGTAAATTCTATGCATTTCCAAACACCAACGCAGGAGCCTTGGGGTGTGTTCA CAGACTGCAAGGGGAGAAGAGCTTGA
AA sequence Show only first row Show all	>Lus10040753 pacid=23157851 polypeptide=Lus10040753 locus=Lus10040753.g ID=Lus10040753.BGIv1.0 annot-version=v1.0 MKYRERRRRKADGNGESERKRMVMSISTGQELLKEICHIPDSPPIPPDQQPTGNDPVLRFRRLCVLPPFSRSISDNVVFSERVCFSDQRAKAGQCSHKVK VFLQYFSLVQVCKYASKEHWEEQCRLWPTSYHPPTFNIDGINGFSDESAQSVYPFMKVAIKLAKASDNLHSKLLQVRVTHSRHDYTNKNGIAGGKCHEQP SASNCSNGSNGRTSEEERLCIAASCLNPWQWSQTASTSHDWHPLRHAALVAIESSSDRDRHLFPCFESAAKQSFEEESVLSVCARPPAKRQKPHHENVSF IHSTSVRWHSFTSESGVNSMHFQTPTQEPWGVFTDCKGRRA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24670		TAD3, EMB2820	tRNA adenosine deaminase 3, EM...		Lus10040753 [exp]	0	1
AT5G01110			Tetratricopeptide repeat (TPR)...		Lus10028942 [exp]	1.0	0.9328
AT3G07360		ATPUB9	ARABIDOPSIS THALIANA PLANT U-B...		Lus10024776 [exp]	2.4	0.8929
AT3G24530			AAA-type ATPase family protein...		Lus10005293 [exp]	3.2	0.9248
AT5G17680			disease resistance protein (TI...		Lus10010221 [exp]	4.9	0.9028
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10029021 [exp]	6.3	0.8986
AT1G18210			Calcium-binding EF-hand family...		Lus10027081 [exp]	9.2	0.8830
AT3G13400		SKS13	SKU5 similar 13 (.1)		Lus10010358 [exp]	9.4	0.8469
AT2G30860		GLUTTR, ATGSTF7...	glutathione S-transferase PHI ...		Lus10029816 [exp]	10.4	0.8893
AT4G04350		EMB2369	EMBRYO DEFECTIVE 2369, tRNA sy...		Lus10020041 [exp]	10.5	0.8872
AT3G15200			Tetratricopeptide repeat (TPR)...		Lus10031270 [exp]	11.0	0.8850

Compare expression of checked genes

Lus10040753 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.