Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54930 107 / 1e-27 AT hook motif-containing protein (.1.2) AT4G21895 73 / 4e-15 DNA binding (.1) AT5G52890 69 / 3e-13 AT hook motif-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016478 [exp] 417 / 3e-148 AT5G54930 125 / 5e-34 AT hook motif-containing protein (.1.2) Lus10002064 [exp] 81 / 5e-17 AT5G52890 114 / 4e-28 AT hook motif-containing protein (.1.2) Lus10001140 [exp] 81 / 6e-17 AT5G52890 113 / 2e-27 AT hook motif-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G138700 [exp] 154 / 1e-43 AT5G54930 93 / 5e-21 AT hook motif-containing protein (.1.2) Potri.001G422966 [exp] 142 / 4e-40 AT5G54930 102 / 4e-25 AT hook motif-containing protein (.1.2) Potri.004G017000 [exp] 82 / 2e-17 AT4G21895 96 / 2e-22 DNA binding (.1) Potri.011G001901 [exp] 72 / 3e-14 AT4G21895 74 / 5e-15 DNA binding (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040754 pacid=23157902 polypeptide=Lus10040754 locus=Lus10040754.g ID=Lus10040754.BGIv1.0 annot-version=v1.0 ATGAGCGAGGCAACTGCAATGAACGATAATCCAATTGTTTCAGCAACCATCCCTGCAAAACGTAAGCGTGGTCGTCCACGCAAGAACCCGAAACCGGATC CTAATGTGGGAACTTATGATAGTTTAAACCGACGGGAGAATTATAATGGTCAATCTGGAGGGGTCAACGGGAGCCAACCCAGGCAACAGAACTTAATGAA TGATATAATGTTAGGGCAGCCTGTCCATGGTGTTATTGAAGCAGTGTTTGATGCAGGGTACTTGCTCAGCGTGAGGATTGGCAACTCAGACACCAACTTG AAGGGTGTGGTGTTCAAACCCGGGCGCTACATTCCTGTTTCAGCTGAGAATGATATTGCCCCCGGTGTTCCAATGATTGCGAGAAACGAGTTTCCTATTC CAAGACAAGAAAATGCACGCATTCGTCGTAGGCGCCATTCTCGAACTAGAGAAAAGTATGTTACTGCTGCTTCTAGTACGGTAGTCTCGAGAGGTGGCCA GGTACTCCCTTTGATGCCTCAAACTGCCTCCTCATCTGGGATCCCGAGAGGCAATGTCGTGCCTGTTGTACTCCAGCCGGTTACCCCATCAAATGGGGTA ATGTCTGAACCATCTTCAGTTCCTATGGCTGGCTCTAAAGGTAAAGCTGCCGTAGATGTTTCTATTCCTAGAAGTGGAGCATCGTTCGTGCAGCAACTGG AAGAAGCTGAGAAGCAAGCGAAACTTCAGGAATCTGAAACTATGAATCAGCAGCCGGTTCAACCTCAATCGGATTTAAACTCCAACAGTTCAACGGAGCC TCCTACTGCATCAATGCAAATTCCAGGTATTTCCTTTTGA
AA sequence Show only first row Show all	>Lus10040754 pacid=23157902 polypeptide=Lus10040754 locus=Lus10040754.g ID=Lus10040754.BGIv1.0 annot-version=v1.0 MSEATAMNDNPIVSATIPAKRKRGRPRKNPKPDPNVGTYDSLNRRENYNGQSGGVNGSQPRQQNLMNDIMLGQPVHGVIEAVFDAGYLLSVRIGNSDTNL KGVVFKPGRYIPVSAENDIAPGVPMIARNEFPIPRQENARIRRRRHSRTREKYVTAASSTVVSRGGQVLPLMPQTASSSGIPRGNVVPVVLQPVTPSNGV MSEPSSVPMAGSKGKAAVDVSIPRSGASFVQQLEEAEKQAKLQESETMNQQPVQPQSDLNSNSSTEPPTASMQIPGISF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54930			AT hook motif-containing prote...		Lus10040754 [exp]	0	1
AT5G52110		CCB2, HCF208	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10005770 [exp]	7.3	0.7950
					Lus10013907 [exp]	10.2	0.8242
AT3G19860	bHLH	bHLH121	basic Helix-Loop-Helix 121, ba...		Lus10041908 [exp]	12.7	0.7909
AT2G21070		FIO1	FIONA1, methyltransferases (.1...		Lus10034481 [exp]	12.7	0.8509
AT4G10930			unknown protein		Lus10032402 [exp]	20.8	0.8000
AT1G67170			unknown protein		Lus10035371 [exp]	21.6	0.7807
AT4G00960			Protein kinase superfamily pro...		Lus10015423 [exp]	22.6	0.8074
AT2G25850		PAPS2	poly(A) polymerase 2 (.1), pol...		Lus10037589 [exp]	30.0	0.8228
AT2G31290			Ubiquitin carboxyl-terminal hy...		Lus10003062 [exp]	30.8	0.7913
AT5G19280	FHA	RAG1, KAPP	ROOT ATTENUATED GROWTH 1, kina...		Lus10021929 [exp]	31.0	0.7330

Compare expression of checked genes

Lus10040754 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.