Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54920 259 / 4e-80 unknown protein AT4G26990 220 / 8e-66 unknown protein AT3G14010 74 / 6e-14 CID4 CTC-interacting domain 4 (.1.2.3.4) AT1G54170 64 / 1e-10 CID3 CTC-interacting domain 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016477 [exp] 845 / 0 AT5G54920 271 / 5e-85 unknown protein Lus10015638 [exp] 70 / 2e-12 AT3G14010 294 / 2e-92 CTC-interacting domain 4 (.1.2.3.4) Lus10037656 [exp] 65 / 8e-11 AT3G14010 357 / 1e-114 CTC-interacting domain 4 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G423200 [exp] 379 / 2e-126 AT5G54920 253 / 3e-77 unknown protein Potri.011G138600 [exp] 320 / 2e-103 AT5G54920 148 / 1e-38 unknown protein Potri.001G171100 [exp] 64 / 1e-10 AT3G14010 298 / 9e-93 CTC-interacting domain 4 (.1.2.3.4) Potri.003G063000 [exp] 57 / 1e-08 AT3G14010 322 / 9e-102 CTC-interacting domain 4 (.1.2.3.4)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040755 pacid=23157612 polypeptide=Lus10040755 locus=Lus10040755.g ID=Lus10040755.BGIv1.0 annot-version=v1.0 ATGGGTTGCCCAAACAGAATAGAGACTGATCCCGCTGATACATGTGCGAGCGAGGCGCTGTTGATTGCTACTATGTGTATAATTGGTCTCCCTGTCGATG TGCACATTAGGGATGGCTCGGTCTACTCCGGAATATTCCACACTGCCTATGGTGATAAGGACTATGGGGTTGTTCTGAAACATGCCAAGTTAGCTAAGAA GGGGAACTGCAATGTAAACACCGGTGATGGGAGTACGATAGAAACTCTTATAATCTATTCCAGTGATCTGGTTCAAGTTGTGGCCAGGGGGGTTTCACTG TCGGCTGATGGCATAAATGGTAGTGTCACAGATTACAATGTTGAAGCTTCTGTCGCCAATGATCCTTCTGAGTTCGCAGCAAAGGAACTTAAAGGATTGC CTCTGGATAGGAAAATAATTGATCAGAATAGACAGATTGGAGATGCATTGGCTCAAGTGACAGACAAACAGTGCAATCAAAAGCTTGAGTTTCAAGGCAA AACAAGTATGCAGGTCGATGAAGTTCGATTTGCAAACACAGCATTGGGTTCTTTCCATACGGAAGTCAAACCTCTTGAGGGTGGATTCCTGTCAGCAAAA ATGTTGCCATATGGAGCATCTCTTGCAACTGCTCCGGTACTCGGTAAGCAGACCAATGGATTCTGTGATAGGCCTGCATCTGCAGACTCCAGCTCTGCAA GTGGTGCTTCATCAGGGATTTCTGTTGTTTCAAATCCTGTATCACGGCATAATTCCTTGACAACAGCTTCTGATATAACATCTCCACAAAGTTCAGAATC CAATAGAAGCTCTAAGGAGTTCAAGCTCAACCCAGAAGCCAAAATATTTTGTCCCTCTTTTGCAAGTTCTGTGTCTGCAACTTCTCAACCAGTTACAGTA TCTGGTGGTATGACGTACACCCATAGTAACTCACCCATAATACCAGTTCCTGCTCCACAACCTGAAGTTGTAATCGGCCCTTTTGCACCCCGGCCATCTG TCCCTGCTAAGATTGCTCCGTATAATAACCTGATAGCTGGAAATGGAGGCAACAATACACAATTTTCACAGCATATGATTGGCCATATGGGAAGCCGGAC GCCACCACTTAGATATGCTGGTCAGTATCACACTGTACCAGCTGGACCTGCTTACGTGCCCCCAAATTCTCCACCTGTTATGGTTGGACGGTTGGGGCAG CTTGTCTATATGCAGCCAGTTGGCCATGATTTACTTCAGAGTACAGGAGGTATGTCAGTAATGCCTGTACGTCCATTGATCAGTCCTCACCAGGTTCAAT ATCCTAAACACCAAGGAAATGTAGCAGCAGCAGCGGGACAAGGCGTACCAGTTTGCGTCTCACCTCCATTTGTACAGCAACCATTTGCACCAATGGCAGG CCACATTCCGCTCTTGCCCCTTCCGATCCCTGCGAATCGTTATCCGATTTCTGTTCCAGCATCCAACGCCCTGTTTGGCACCCGATTTCCGTGA
AA sequence Show only first row Show all	>Lus10040755 pacid=23157612 polypeptide=Lus10040755 locus=Lus10040755.g ID=Lus10040755.BGIv1.0 annot-version=v1.0 MGCPNRIETDPADTCASEALLIATMCIIGLPVDVHIRDGSVYSGIFHTAYGDKDYGVVLKHAKLAKKGNCNVNTGDGSTIETLIIYSSDLVQVVARGVSL SADGINGSVTDYNVEASVANDPSEFAAKELKGLPLDRKIIDQNRQIGDALAQVTDKQCNQKLEFQGKTSMQVDEVRFANTALGSFHTEVKPLEGGFLSAK MLPYGASLATAPVLGKQTNGFCDRPASADSSSASGASSGISVVSNPVSRHNSLTTASDITSPQSSESNRSSKEFKLNPEAKIFCPSFASSVSATSQPVTV SGGMTYTHSNSPIIPVPAPQPEVVIGPFAPRPSVPAKIAPYNNLIAGNGGNNTQFSQHMIGHMGSRTPPLRYAGQYHTVPAGPAYVPPNSPPVMVGRLGQ LVYMQPVGHDLLQSTGGMSVMPVRPLISPHQVQYPKHQGNVAAAAGQGVPVCVSPPFVQQPFAPMAGHIPLLPLPIPANRYPISVPASNALFGTRFP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54920			unknown protein		Lus10040755 [exp]	0	1
AT1G60070			Adaptor protein complex AP-1, ...		Lus10012988 [exp]	6.6	0.8936
AT3G08550		ABI8, ELD1, KOB...	KOBITO, ABA INSENSITIVE 8, elo...		Lus10024181 [exp]	7.3	0.8733
AT4G34450			coatomer gamma-2 subunit, puta...		Lus10040465 [exp]	10.9	0.8811
AT5G58510			unknown protein		Lus10031287 [exp]	20.0	0.8492
AT2G45540			WD-40 repeat family protein / ...		Lus10009305 [exp]	20.4	0.8722
AT1G35220			unknown protein		Lus10036487 [exp]	23.6	0.8703
AT4G32640			Sec23/Sec24 protein transport ...		Lus10000939 [exp]	23.6	0.8620
AT1G13860		QUL1	QUASIMODO2 LIKE 1 (.1.2.3.4)		Lus10037101 [exp]	24.9	0.8593
AT1G52360			Coatomer, beta' subunit (.1.2)		Lus10037524 [exp]	24.9	0.8565
AT2G42520			P-loop containing nucleoside t...		Lus10016207 [exp]	26.5	0.8120

Compare expression of checked genes

Lus10040755 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.