Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46870 314 / 9e-109 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62350 159 / 2e-48 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G09320 81 / 4e-17 VPS9B Vacuolar sorting protein 9 (VPS9) domain (.1) AT3G27750 59 / 2e-10 EMB3123 EMBRYO DEFECTIVE 3123, unknown protein AT4G39620 58 / 1e-09 ATPPR5, EMB2453 EMBRYO DEFECTIVE 2453, A. THALIANA PENTATRICOPEPTIDE REPEAT 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G13040 58 / 2e-09 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G77340 58 / 2e-09 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G17670 58 / 2e-09 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G41170 57 / 3e-09 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT4G20090 56 / 9e-09 EMB1025 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016476 [exp] 452 / 3e-163 AT3G46870 346 / 3e-121 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10000892 [exp] 189 / 1e-59 AT1G62350 318 / 3e-111 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036049 [exp] 187 / 5e-59 AT1G62350 316 / 1e-110 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10043104 [exp] 63 / 6e-11 AT3G16890 720 / 0.0 pentatricopeptide (PPR) domain protein 40 (.1) Lus10012328 [exp] 62 / 7e-11 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006373 [exp] 62 / 8e-11 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10011849 [exp] 61 / 2e-10 AT5G48730 681 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036633 [exp] 59 / 2e-10 AT4G39620 218 / 9e-69 EMBRYO DEFECTIVE 2453, A. THALIANA PENTATRICOPEPTIDE REPEAT 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10028379 [exp] 61 / 3e-10 AT2G17670 545 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G038200 [exp] 340 / 6e-119 AT3G46870 326 / 2e-113 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G275000 [exp] 179 / 2e-55 AT1G62350 274 / 7e-94 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G134300 [exp] 99 / 6e-25 AT5G09320 114 / 1e-28 Vacuolar sorting protein 9 (VPS9) domain (.1) Potri.009G169600 [exp] 66 / 1e-12 AT5G09320 219 / 8e-67 Vacuolar sorting protein 9 (VPS9) domain (.1) Potri.006G257300 [exp] 64 / 1e-11 AT1G62930 481 / 3e-163 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G025600 [exp] 63 / 4e-11 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G242500 [exp] 62 / 5e-11 AT1G62930 473 / 1e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G271200 [exp] 62 / 6e-11 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G243600 [exp] 62 / 6e-11 AT5G48730 691 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G074500 [exp] 62 / 1e-10 AT1G62930 478 / 1e-162 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10040756 pacid=23157780 polypeptide=Lus10040756 locus=Lus10040756.g ID=Lus10040756.BGIv1.0 annot-version=v1.0 ATGGCGATTCGCGCCTTTTCGAGGTCGAGAGTCTCCCGGACTGCCGTGGTTTCGTTCTTCCAGAACACACCGCACAATCCTACAAAACTAAATCCGGAAT TTGTAGAGTCCCCGATACCATCATTAGACTCGAATGTTCCTACCAGCTCACTATCCGGGCTCAGGCAATACCACGATGGCCGACCCAGAGGACCTCTCTG GAGAGGCAAGAAGCTGATAGGTAAAGAGGCGCTCTTTGTGGTTATGGGGTTAAAGCGCTTCAAGGACGAAGAGGAAAAGCTCGACAAGTTCATCAAAACG CATGTTAACAGACTGCTGAAGGTGGACATGGTTGCTGTCGTCTGCGAGCTCGAGCGCCAAGACGAAGTTAGTCTGGCCGTTAAGATATTTCAAGTGATAC AGAAGCAAGACTGGTACACGCCGGATCGCTATATTTACAAGGACCTGATAATTGCGTTAACGAAATCCAATAAAATGGATGAAGCAATGAAGCTGTGGCA GTCTATGAGGGACGAGGGTCTTTTCCCGGATTCCCAAATGTACACTGAAGTCATCAGGGGTTTCTTGAGGGATGGATCCCCTGCTGATGCAATGAACGTG TACGAAGACATGAAGGAATCCCCTGATCCTCCGGAGGAATTGCCGTTCAGGATTTTGTTGAAGGGCCTTCTTCCGCACCCTCTTTTGAGGAACAGAGTTA AGCAAGACTACGAGGAGTTGTTTCCCGAGAAGAATGTCTTTGATCCTCCAGAAGAGATATTTGGCATGCACTGA
AA sequence Show only first row Show all	>Lus10040756 pacid=23157780 polypeptide=Lus10040756 locus=Lus10040756.g ID=Lus10040756.BGIv1.0 annot-version=v1.0 MAIRAFSRSRVSRTAVVSFFQNTPHNPTKLNPEFVESPIPSLDSNVPTSSLSGLRQYHDGRPRGPLWRGKKLIGKEALFVVMGLKRFKDEEEKLDKFIKT HVNRLLKVDMVAVVCELERQDEVSLAVKIFQVIQKQDWYTPDRYIYKDLIIALTKSNKMDEAMKLWQSMRDEGLFPDSQMYTEVIRGFLRDGSPADAMNV YEDMKESPDPPEELPFRILLKGLLPHPLLRNRVKQDYEELFPEKNVFDPPEEIFGMH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G46870			Pentatricopeptide repeat (PPR)...		Lus10040756 [exp]	0	1
AT1G69210			Uncharacterised protein family...		Lus10026674 [exp]	7.7	0.7922
AT5G25500			unknown protein		Lus10002897 [exp]	15.5	0.8033
AT4G35380			SEC7-like guanine nucleotide e...		Lus10022975 [exp]	16.7	0.7173
AT5G02050			Mitochondrial glycoprotein fam...		Lus10012653 [exp]	19.6	0.6998
AT4G26780		MGE2, AR192	mitochondrial GrpE 2, Co-chape...		Lus10032565 [exp]	26.0	0.7256
AT1G63270		ABCI1, ATNAP10	ATP-binding cassette I1, non-i...		Lus10022692 [exp]	38.6	0.7805
AT3G23710		AtTic22-III	translocon at the inner envelo...		Lus10022378 [exp]	39.5	0.7154
AT3G08000			RNA-binding (RRM/RBD/RNP motif...		Lus10031534 [exp]	41.3	0.7449
AT1G57540			unknown protein		Lus10035345 [exp]	41.7	0.7693
AT4G21720			unknown protein		Lus10017512 [exp]	53.3	0.6942

Compare expression of checked genes

Lus10040756 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.