Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59070 594 / 0 UDP-Glycosyltransferase superfamily protein (.1) AT4G19460 407 / 1e-134 UDP-Glycosyltransferase superfamily protein (.1) AT1G73160 368 / 5e-120 UDP-Glycosyltransferase superfamily protein (.1) AT5G05950 100 / 2e-24 MEE60 maternal effect embryo arrest 60 (.1) AT3G46890 87 / 3e-19 unknown protein AT3G07510 80 / 5e-17 unknown protein AT2G01580 59 / 7e-10 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016475 [exp] 932 / 0 AT5G59070 602 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10034760 [exp] 403 / 3e-133 AT4G19460 636 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10033297 [exp] 396 / 2e-130 AT4G19460 620 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10014499 [exp] 384 / 3e-126 AT1G73160 616 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10032187 [exp] 384 / 4e-126 AT1G73160 615 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10016474 [exp] 229 / 7e-71 AT5G05950 183 / 3e-59 maternal effect embryo arrest 60 (.1) Lus10009873 [exp] 100 / 4e-24 AT5G05950 201 / 2e-66 maternal effect embryo arrest 60 (.1) Lus10038243 [exp] 81 / 8e-17 AT3G07510 243 / 2e-82 unknown protein Lus10025856 [exp] 79 / 2e-16 AT3G07510 244 / 3e-83 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G038400 [exp] 727 / 0 AT5G59070 609 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.003G105500 [exp] 419 / 9e-140 AT4G19460 664 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.001G128300 [exp] 416 / 7e-139 AT4G19460 645 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.011G097000 [exp] 374 / 3e-122 AT1G73160 657 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.009G038500 [exp] 110 / 2e-27 AT5G05950 150 / 2e-46 maternal effect embryo arrest 60 (.1) Potri.010G196100 [exp] 103 / 2e-25 AT5G05950 181 / 2e-58 maternal effect embryo arrest 60 (.1) Potri.002G239500 [exp] 87 / 2e-19 AT3G07510 202 / 8e-67 unknown protein Potri.014G176000 [exp] 81 / 2e-17 AT3G07510 207 / 2e-68 unknown protein Potri.014G176300 [exp] 62 / 1e-10 AT3G07510 144 / 1e-43 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00534 [flax] [poplar] Glycos_transf_1 Glycosyl transferases group 1
Representative CDS sequence Show only first row Show all	>Lus10040757 pacid=23157904 polypeptide=Lus10040757 locus=Lus10040757.g ID=Lus10040757.BGIv1.0 annot-version=v1.0 ATGGCGCGATCCGCTACCACTAAAATCCATGTTACCGCCTTAGACGGGATCGTCAACGTCAACTCTCTCTTCACACTGGCCCTCTTCGTCGGCCTAGCAA AACCACTCTCAAGCTCCTCCGCTCTCATCGCCGACGCCTCCTCCCTCGCCGGCTCAGCCACCGCAGAAGACTTCGTCGTCTTCCACTTCTATGCCTTCGC CTTCTTCCTCTTCTCCAGCCTAATCGCCTTGGCTCTCAAGCAGGCCATCACACTCTCTGACAAGACCGCCGCCGGTACCCCAAACACTAGTAATTTCGCC AGCCTGATTGCTGATTTGGTCGGTACCGGTTACTACGAGTCTCTGGTTCATATCAATTTGAAGGCTTTGAAGGTTGGGACTCTGGTTTCAGGGTTGGGTT CCATTATGGGGTGTGGATTCTTGACTATGGCGCTTGTGAATTTGGTGCAGATCAAATTGGGAGTATTGAGCTGTGGTGGATTGGAATGGCTAAATTTTGC CTCCCATGTAAGTTTGATCTGGGAAAAGTCTAACAGAACTTGGATCGGTTCTTCGTGCAGCTATCTGGTGGACTTGTTGTCACCCAAAAGATTCTGCTCA GATTTTTGCTCCTCCTCCATTGAACTTTGCTACATAGTTTTCTTTGATGAGAGGTTGATTTCAATGGCCAAGGATCAAATGGCGATCTTCAGCTTCCGAT GCTTCTGCTTCAGTATAGTTCTCCTCTCTGCAATTTCATCCATCTCATTCCTCTTCTGGTGTCAGTGTTCAGGTTCATGTTATTCTGAAACCCAGATGAC ATTCCAGAAGCAAACCCAAGCTATCAATCTACTCTCTCTTACTTCAGCTTGGAATCACCTCTCATTCTCTTCAGAACCACCTCCAAGGCTCCTGAAAATC GCACTCTTCGTGAAGAAATGGCCTCACAGATCTCACGCAGGAGGGCTTGAACGCCATGCCTTGACCCTTCATCTTGCACTTGCCATAAGAGACAACGACC TTCACATCTTCACCGCCTCAAACAACGGCTCGTTCCCCAGGTATGATCAGATGAGCAATTTGTACTTTCACCTGTCGAAACCCACCGCTGCGGGCTATTT AGACCAATCCACGGTCTGGAAGCAGCTCCAGACTCAGAATTCGATAGCGAGGCCTTTCGATGTGATCCACACGGAAAGCGTGGGACTTTTGCATACACGG GCTCGAAATTTGACCAATCTAGCAGTCACTTGGCATGGGATTGCTTACGAAACGGTTCATACAGACATCATTCAGGAGCTTCTCCGAAGCTCCGAGGAGC CCCAATCGTATGCACTGGCTGAAAGAGTGATCAAGGTTGTTGAAGAAGTGAGATTCTTCCAAAACTATGCTCACCATGTTGCTACAAGTGATCATGCTGG AGATGTGTTGAGAAGGATCTATATGATCCCGGAAGAGCGAGTTCATGTCATTCTGAATGGCGTTGATGAGGACACTTTCCGGGCTGATCCAGTGAGAGGG ACGGAATTCAAGATGAAGTTTGGCGTCTCCGAGAAAAAATCGTTAGTATTGGGCATGGCGGGGAGGTTGGTTAAGGATAAAGGTCACCCTTTGATGTTCG AAGCGCTGAAGCAGGTTCTAGGCGAAAACGAAGCATTCCGGAATGATGTCGTAGTCCTGGTGGCCGGAGATGGTCCTTGGGGAGCAAGGTACAAAGATCT TGGAGCGAGTACCGTAGTTTTGGGACCGTTGGATCATGCTCAGCTTTCGAGTTTCTACAACGCGATCGACATTTTTGTGAACCCGACACTTCGAGCTCAG GGCTTGGATCATACCTTGCTCGAGGCGATGCTGTCTGGGAAGCCGGTGTTGGCCACACGAGTGGCCAGCATTACGGGGTCTGTGATTGTGAGTGGAGAGA TAGGTTACACTTTCTCGCCGACTGTGGATTCGCTGAAGAAAGCTTTGTTGAAAGTGTGGGAAGATGGAAGAGGAGTCCTGGAGAAGAAAGGAGAGAATTG TAGGCGGACAGGTTTGCAACTCTTCACTGCTACAAAGATGGCTGCTGCTTATGAAAGGTTGTTCCTTTGTATAGCAGACCAAGATCACTGTCGGTACCCG ACTGTCAGTACCCGTTTAGCTTAG
AA sequence Show only first row Show all	>Lus10040757 pacid=23157904 polypeptide=Lus10040757 locus=Lus10040757.g ID=Lus10040757.BGIv1.0 annot-version=v1.0 MARSATTKIHVTALDGIVNVNSLFTLALFVGLAKPLSSSSALIADASSLAGSATAEDFVVFHFYAFAFFLFSSLIALALKQAITLSDKTAAGTPNTSNFA SLIADLVGTGYYESLVHINLKALKVGTLVSGLGSIMGCGFLTMALVNLVQIKLGVLSCGGLEWLNFASHVSLIWEKSNRTWIGSSCSYLVDLLSPKRFCS DFCSSSIELCYIVFFDERLISMAKDQMAIFSFRCFCFSIVLLSAISSISFLFWCQCSGSCYSETQMTFQKQTQAINLLSLTSAWNHLSFSSEPPPRLLKI ALFVKKWPHRSHAGGLERHALTLHLALAIRDNDLHIFTASNNGSFPRYDQMSNLYFHLSKPTAAGYLDQSTVWKQLQTQNSIARPFDVIHTESVGLLHTR ARNLTNLAVTWHGIAYETVHTDIIQELLRSSEEPQSYALAERVIKVVEEVRFFQNYAHHVATSDHAGDVLRRIYMIPEERVHVILNGVDEDTFRADPVRG TEFKMKFGVSEKKSLVLGMAGRLVKDKGHPLMFEALKQVLGENEAFRNDVVVLVAGDGPWGARYKDLGASTVVLGPLDHAQLSSFYNAIDIFVNPTLRAQ GLDHTLLEAMLSGKPVLATRVASITGSVIVSGEIGYTFSPTVDSLKKALLKVWEDGRGVLEKKGENCRRTGLQLFTATKMAAAYERLFLCIADQDHCRYP TVSTRLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59070			UDP-Glycosyltransferase superf...		Lus10040757 [exp]	0	1
AT3G05630		PLDP2, PDLZ2, P...	PHOSPHOLIPASE D ZETA 2, phosph...		Lus10020672 [exp]	6.2	0.7756
AT5G61390			Polynucleotidyl transferase, r...		Lus10000567 [exp]	7.5	0.7629
AT5G20870			O-Glycosyl hydrolases family 1...		Lus10001183 [exp]	7.6	0.7956
AT5G36220		CYP91A1, CYP81D...	CYTOCHROME P450 91A1, cytochro...		Lus10024820 [exp]	16.1	0.7677
AT1G69230		SP1L2	SPIRAL1-like2 (.1.2)		Lus10032297 [exp]	18.7	0.7661
AT1G21240		WAK3	wall associated kinase 3 (.1)		Lus10013387 [exp]	20.8	0.7941
AT1G71110			unknown protein		Lus10007962 [exp]	28.8	0.7578
AT5G49900			Beta-glucosidase, GBA2 type fa...		Lus10003517 [exp]	29.3	0.7736
AT3G16030		CES101	CALLUS EXPRESSION OF RBCS 101,...		Lus10025774 [exp]	29.6	0.7646
AT5G52340		ATEXO70A2	exocyst subunit exo70 family p...		Lus10021283 [exp]	37.0	0.7482

Compare expression of checked genes

Lus10040757 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.